Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq12187 185 8e-42 >seq12187 Length=3570 Score = 185 bits (204), Expect = 8e-42 Identities = 483/727 (66%), Gaps = 16/727 (2%) Strand=Plus/Minus Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065 || |||||| ||| | ||| | ||||| | ||| || | ||||| ||||||| |||| Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690 Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125 || | | |||||||| || || || || ||||| | || || | ||| |||| | Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630 Query 14126 TCTATAGACACAGCCTCGTTTATAATAATC--GTAATAATTTCATTAGAAGGAGGATATT 14183 ||||| |||||||| ||| || || ||| | ||| | ||| | Sbjct 1629 TCTATTTTTACAGCCTCACATATGATT-TCAAGTA-TGCGCTCACGACTAGGTTTCTGCA 1572 Query 14184 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 14243 | |||||| || || ||||| ||||| |||||||| | ||| || || | ||| | Sbjct 1571 CCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCA 1512 Query 14244 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 14303 | || || || ||||| | || ||||| | || ||||| || | ||| || || | | Sbjct 1511 GCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGG 1452 Query 14304 CGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAA 14363 |||| || ||||| || |||||||| || ||||| ||||| | || || |||| Sbjct 1451 CGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAA 1392 Query 14364 ACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14423 | || ||| || ||||| | ||||| |||| || || |||| | | Sbjct 1391 AATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAG 1332 Query 14424 CCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGT---ACTTGAAATGTATG 14480 || |||||||| || ||||||| | || | ||| || || | ||||| | Sbjct 1331 GCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTAGG 1275 Query 14481 TATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14540 | ||||| | | ||| |||||||||||||| | |||||||| || || || ||||||| Sbjct 1274 TGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCAT 1215 Query 14541 AAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCAT 14600 ||||||| | || || | |||||| ||| | || | || |||||||||||| Sbjct 1214 AAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCAT 1155 Query 14601 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660 | || || |||||| || || ||||||||||| | | ||||| || ||| | Sbjct 1154 TGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC-T 1098 Query 14661 CATT-GCTG--AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTG 14717 |||| ||| | ||||| ||| || | |||||| | | ||| ||||| || |||| Sbjct 1097 CATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTG 1038 Query 14718 TCCAAAA 14724 ||||||| Sbjct 1037 TCCAAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482158395643320