Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_003027.1
Length=150773
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 185 8e-42
>seq12187
Length=3570
Score = 185 bits (204), Expect = 8e-42
Identities = 483/727 (66%), Gaps = 16/727 (2%)
Strand=Plus/Minus
Query 14006 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCCGCAATGAACTCAATATATTGAGAC 14065
|| |||||| ||| | ||| | ||||| | ||| || | ||||| ||||||| ||||
Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690
Query 14066 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 14125
|| | | |||||||| || || || || ||||| | || || | ||| |||| |
Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630
Query 14126 TCTATAGACACAGCCTCGTTTATAATAATC--GTAATAATTTCATTAGAAGGAGGATATT 14183
||||| |||||||| ||| || || ||| | ||| | ||| |
Sbjct 1629 TCTATTTTTACAGCCTCACATATGATT-TCAAGTA-TGCGCTCACGACTAGGTTTCTGCA 1572
Query 14184 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 14243
| |||||| || || ||||| ||||| |||||||| | ||| || || | ||| |
Sbjct 1571 CCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCA 1512
Query 14244 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 14303
| || || || ||||| | || ||||| | || ||||| || | ||| || || | |
Sbjct 1511 GCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGG 1452
Query 14304 CGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAA 14363
|||| || ||||| || |||||||| || ||||| ||||| | || || ||||
Sbjct 1451 CGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAA 1392
Query 14364 ACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAAT 14423
| || ||| || ||||| | ||||| |||| || || |||| | |
Sbjct 1391 AATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAG 1332
Query 14424 CCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGT---ACTTGAAATGTATG 14480
|| |||||||| || ||||||| | || | ||| || || | ||||| |
Sbjct 1331 GCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTAGG 1275
Query 14481 TATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCAT 14540
| ||||| | | ||| |||||||||||||| | |||||||| || || || |||||||
Sbjct 1274 TGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCAT 1215
Query 14541 AAAAACATCTAGCTTCTGACCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCAT 14600
||||||| | || || | |||||| ||| | || | || ||||||||||||
Sbjct 1214 AAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCAT 1155
Query 14601 TAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTT 14660
| || || |||||| || || ||||||||||| | | ||||| || ||| |
Sbjct 1154 TGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC-T 1098
Query 14661 CATT-GCTG--AGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTG 14717
|||| ||| | ||||| ||| || | |||||| | | ||| ||||| || ||||
Sbjct 1097 CATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTG 1038
Query 14718 TCCAAAA 14724
|||||||
Sbjct 1037 TCCAAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 482158395643320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |