Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4853 293 2e-74 seq2021 284 1e-71 seq12187 212 6e-50 >seq4853 Length=2014 Score = 293 bits (324), Expect = 2e-74 Identities = 955/1481 (64%), Gaps = 29/1481 (2%) Strand=Plus/Plus Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 |||| || |||| || || || || || || || ||||| || || | || | || | Sbjct 1 CATTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAAT 60 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACG 22643 | | || ||| || || | |||||| ||| ||| || ||| | ||| ||||| | | Sbjct 61 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 120 Query 22644 GCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGT 22703 | || || | ||||||||| || || || | || || | || ||| | | Sbjct 121 GTGTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCAT 177 Query 22704 ACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAAT 22763 | ||||| || ||||| || | || | || ||||| || ||||| || || |||| Sbjct 178 AAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAAT 237 Query 22764 ATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATAC 22823 | || || || || |||| | || | | || | | ||||| || || || Sbjct 238 AAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAAC 297 Query 22824 GCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCA 22883 |||| | | || || || || | || || || || ||||| || || || | || Sbjct 298 GCATGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCA 357 Query 22884 GATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGT 22943 ||| || || ||||| |||| || || |||| || || || ||||||| | Sbjct 358 TATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAAT 417 Query 22944 TTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACG----CCCGAT 22999 | | || |||||||| | | | ||| || ||| | | | Sbjct 418 TACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGT 477 Query 23000 TGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTG 23059 || |||||| | |||| || || ||||| | ||| || || || | || || Sbjct 478 TG----ACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGT 533 Query 23060 GACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTC 23119 | || || ||||||||||| || |||| |||||| ||||| || ||||| | ||| Sbjct 534 GCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGT 593 Query 23120 TGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACC 23179 || || || || ||||| || | |||||| |||||||| || || ||||| || || || Sbjct 594 TGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACT 653 Query 23180 TGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCT 23239 || | ||| || || || ||||| || ||||| | |||| || | | ||| Sbjct 654 TGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCT 713 Query 23240 TCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCG 23299 || ||| || || | || | || ||||| |||| || || || ||| Sbjct 714 TCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCG 773 Query 23300 GGCGA-TTGCATCGGACACATGAGACTCCACATTGAGTCATTT---TCAACGCGTCTCAT 23355 || | ||| | || |||||||| ||| || | ||| | || || ||| |||| Sbjct 774 GGGCACTTGTGTGGG-CACATGAGTGACCA-ATCGC--CATCTGCCTCCACACGTTTCAT 829 Query 23356 AAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCC 23415 || | || |||||||| ||||| ||||| | || || || || ||| || ||||| Sbjct 830 GAACAAGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCC 889 Query 23416 GGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAAC 23475 || || || |||||||||||||| || || | |||| ||||| || || | || | Sbjct 890 AGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGAT 949 Query 23476 GGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTA 23535 ||| || || || || | || ||| |||||||| ||||| || ||| ||| ||| | Sbjct 950 GGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAA 1009 Query 23536 CACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACC 23595 ||| | ||||| ||||| | ||| || || | ||| ||| || | | || || Sbjct 1010 CACACGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCC 1069 Query 23596 TTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGC 23655 ||| || || | | || || | | || ||||| || | || || || ||||| || Sbjct 1070 TTTGGCGCGTATGCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGC 1129 Query 23656 GCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAA 23715 |||||| | | | | | | || ||||||||| ||| | | | || || ||| Sbjct 1130 GCATTGCTCTACGGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAA 1189 Query 23716 ACACGAAGACATTTGCGCTTTGGGCGTA-----GCGGCCGAGAACAGTGTCGGGCTGGCG 23770 ||| || |||| ||| ||||||| || || | ||| || || || |||| Sbjct 1190 ACAGGAGGACAGTTG-----TGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGCG 1244 Query 23771 TGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCT 23830 || ||||| || | | || | || |||||| || || ||||| ||||| || ||||| Sbjct 1245 TGAGTAAAATAGCGCTCTGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTCG 1304 Query 23831 CCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCG 23890 |||||||| || | || || ||||||| | | |||||| | |||||| | | || Sbjct 1305 CCGTGTATGCCCACAGCCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCCA 1364 Query 23891 TTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAG 23950 || ||||| || | ||| ||||||| | || || ||||| || || | |||| |||| Sbjct 1365 TTGATTTTCAATAAATAGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAAG 1424 Query 23951 TCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991 || ||||| | | ||||| ||||||||||||| ||||| Sbjct 1425 TCGCGATCATAAATAATGGCGGAATTCAAACGGTTGGCATT 1465 >seq2021 Length=2943 Score = 284 bits (314), Expect = 1e-71 Identities = 958/1486 (64%), Gaps = 50/1486 (3%) Strand=Plus/Minus Query 22109 TCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCCGTC 22168 ||||| ||||| ||||| || || || || || || ||||| | ||||||||| || ||| Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 22169 TTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGCA-A 22227 |||| || ||||| |||| |||||||| || |||| ||| |||||| ||||| | Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 22228 GTC-CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCCA 22286 | | |||||| || ||||| ||||| ||||| ||||| || || ||||| || |||| Sbjct 2029 GCCACATGTATG--TTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCA 1972 Query 22287 TATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCTA 22346 | || || | || | || || ||||| || |||||||||| | | | | Sbjct 1971 TTTTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCT 1912 Query 22347 ACGGTATCGATTCGATCCTCTGGACGGACCC--GTTATTGTGTATGATCAAATTTTTAAT 22404 |||||| || || | || | ||| || ||| | || |||| ||||| || Sbjct 1911 GCGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCA--TTTTTCAT 1854 Query 22405 CGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTG 22464 ||| | ||| | | | | |||||||||| | || |||| | |||||||| || Sbjct 1853 ATCATCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTG 1794 Query 22465 AAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTC 22524 || || || ||||| || || ||| || || || || || | || || |||||||| Sbjct 1793 GAATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTC 1734 Query 22525 ATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTT 22584 ||| || |||| || || || || || || || ||||| || || | || | || || Sbjct 1733 ATTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATT 1674 Query 22585 TCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGG 22644 | || ||| || || | |||||| ||| ||| || ||| | ||| ||||| | || Sbjct 1673 ACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGG 1614 Query 22645 CGTCACATTGTCCCACATATCGTATTGCAACACGCC-----------GCGA-CTCGCCGG 22692 || || | ||||||||| || || || | || |||| | ||| Sbjct 1613 TGTT---TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATA 1557 Query 22693 GCT-----------GCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAG 22741 | ||| | || ||||| || ||||| || | || | || ||| Sbjct 1556 AGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAG 1497 Query 22742 CTCGCCTCCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCG 22801 || || ||||| || || ||||| || || || || |||| | || | | || Sbjct 1496 CTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCT 1437 Query 22802 GCGACGCTTTCGTACGGCATACGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCT 22861 | | ||||| || || |||||| | | || || || || | || || ||||| Sbjct 1436 TCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCA 1377 Query 22862 ATACCGATCGGTCGGTTTTTCAGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTC 22921 ||||| || || || | || ||| || || ||||| |||| || || |||| Sbjct 1376 ATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTG 1317 Query 22922 GAATCGATTGTTCTGTTCAAGTTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCA 22981 || || || ||||||| || | || |||||||| | | | | Sbjct 1316 ATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTA 1257 Query 22982 AAGTCGTAAACG----CCCGATTGTACAACAAACTTGTTGACGGCGATCGAGGCAAGATT 23037 || || ||| | | ||| |||||| | |||| || || ||||| | ||| Sbjct 1256 AAATCATAAGTCTTGTCTGGGTTG----ACAAACATATTGAGTGCAATTGAGGCTAAATT 1201 Query 23038 GCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACA 23097 || || || | || || | || || ||||||||||| || |||| |||||| || Sbjct 1200 ACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCA 1141 Query 23098 CTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCAT 23157 ||| || ||||| | ||| || || || || ||||| || | |||||| |||||||| Sbjct 1140 CTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCAT 1081 Query 23158 GTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATAGTCTGAGCGTG 23217 || || ||||| || || ||||| | ||| || || || ||||| || ||||| | Sbjct 1080 ATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTT 1021 Query 23218 AACACGTCGCACGTACCTGCCTTCTTCCTCGTACTTTTGGTACAACGCGTCAAATTCGGC 23277 |||| || | | ||||| ||| || || | || | || ||||| | Sbjct 1020 AACAGTGCGATTGGCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTC 961 Query 23278 ACCGTAACAGTCGGCCAGGCCGGGCGA-TTGCATCGGACACATGAGACTCCACATTGAGT 23336 ||| || || || ||||| | ||| | || |||||||| ||| || | Sbjct 960 ACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGG-CACATGAGTGACCA-ATCGC-- 905 Query 23337 CATTT---TCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGC 23393 ||| | || || ||| |||| || | || |||||||||||||| || || | || | Sbjct 904 CATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTC 845 Query 23394 GGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCG 23453 | || || ||| || ||||| || || || |||||||||||||| || || | |||| Sbjct 844 GTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCG 785 Query 23454 CATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGA 23513 ||||| || || | || | ||| || ||||| || | || ||| |||||||| | Sbjct 784 AGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCA 725 Query 23514 CGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACC 23559 |||| || ||| ||| ||| |||| | ||||| ||||| | ||| Sbjct 724 CGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACC 679 >seq12187 Length=3570 Score = 212 bits (234), Expect = 6e-50 Identities = 481/713 (67%), Gaps = 24/713 (3%) Strand=Plus/Plus Query 57588 AAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGAT 57647 ||||| ||||| || |||||||| || || ||||| || | | |||||| ||| || Sbjct 1016 AAGGCCGAAGCTTCATTTTGGACAGTGGAGGAAGTGGATTTATGCAAGGATATGAATGAC 1075 Query 57648 TGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 ||||| | | ||| |||||| ||||||| || || ||||| ||||||||| Sbjct 1076 TGGGAAAAATTGACAGATAATGAGAGGCATTTTATATCGCATGTTTTGGCATTTTTCGCC 1135 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCA--CAAGAAGTGCAAG 57765 || || ||||| ||||| || || |||||||| | || ||||| |||||||| ||| Sbjct 1136 GCCTCTGATGGCATTGTCAATGAAAATTTGGT--AGAGCGTTTCAGCCAAGAAGTACAAA 1193 Query 57766 TGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAA 57825 | || |||||| | || ||||| || || ||| | ||||| ||||| ||||| || |||| Sbjct 1194 TAACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATGTGCACTCTGAAA 1253 Query 57826 TGTATTCGCTACTCATCGA----TACGTACGTGAAGGACAACGACGAGAAACGTAGACTG 57881 |||| | | || || ||| ||||||| | ||| ||| || | || Sbjct 1254 TGTACAGCATTTTGATTGACACCTACATACGTGACACAAAACAACGTGA----TTTTCTA 1309 Query 57882 TTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGG 57941 || ||||| || ||||| |||| || | |||||||| || ||| | || ||| Sbjct 1310 TTTAACGCCATTGAAACGCTGCCTGCTGTTAAGAAGAAGGCTGATTGGGCCATGGCCTGG 1369 Query 57942 ATAAAAAGCGCCA-CGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGG 58000 || | || | |||||| || | ||| | | || || || || || || || || Sbjct 1370 AT-CTCATCGAAATCGGCCAATTTTGGTGAGCGTATTATAGCATTTGCAGCTGTTGAGGG 1428 Query 58001 TATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCC 58060 ||| ||||| ||||| || || | || || ||| | |||||||| || || ||||| Sbjct 1429 TATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAGAAACGTGGTCTCATGCC 1488 Query 58061 CGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGC 58120 |||||||| || ||| ||| |||| || || ||||| || | ||| ||| ||||| Sbjct 1489 TGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTGCATTGTGACTTTGC 1548 Query 58121 GTGCCTAATGTACTCTCACATT--GTCAATAAACCGACGCGGGATCGCATCTTGGACATT 58178 || | |||| || ||||| || | ||||| | || || ||||| | || || Sbjct 1549 CTGTTTGATGT--TCAAACATTTGGTGCAGAAACCTAGTCGTGAGCGCATACTTGAAATC 1606 Query 58179 ATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATG 58238 || ||||| || || ||| | |||||| |||| || || || || ||| || Sbjct 1607 ATATGTGAGGCTGTAAAAATAGAACAAGAGTTTCTCACTGATGCGCTGCCTGTGAATCTG 1666 Query 58239 CTCGGTATGAA---CAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGA 58288 | || ||||| ||| | || ||||| | || || |||||||| || || Sbjct 1667 ATTGGCATGAATTGCAA--ACTT-ATGTCTGAATATATAGAGTTTGTGGCTGA 1716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445593392488080