Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_003315.1
Length=31508
Score E
Sequences producing significant alignments: (Bits) Value
seq2305 84.2 4e-12
>seq2305
Length=5865
Score = 84.2 bits (92), Expect = 4e-12
Identities = 67/81 (83%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416
|||||| |||||| ||| ||||||||| ||||| ||||||||||| |||||||||
Sbjct 5280 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 5221
Query 417 GACTGAGCTAACGACCCAATT 437
|||||||||||||| || ||
Sbjct 5220 AACTGAGCTAACGACACATTT 5200
Score = 82.4 bits (90), Expect = 2e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416
|||||| |||||| ||| ||||||||| ||||| ||||||||||| |||||||||
Sbjct 4525 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 4466
Query 417 GACTGAGCTAACGACCCA 434
|||||||||||||| ||
Sbjct 4465 AACTGAGCTAACGACACA 4448
Score = 82.4 bits (90), Expect = 2e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416
|||||| |||||| ||| ||||||||| ||||| ||||||||||| |||||||||
Sbjct 5028 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 4969
Query 417 GACTGAGCTAACGACCCA 434
|||||||||||||| ||
Sbjct 4968 AACTGAGCTAACGACACA 4951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 100666869742860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |