Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003315.1 Length=31508 Score E Sequences producing significant alignments: (Bits) Value seq2305 84.2 4e-12 >seq2305 Length=5865 Score = 84.2 bits (92), Expect = 4e-12 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||| |||||| ||| ||||||||| ||||| ||||||||||| ||||||||| Sbjct 5280 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 5221 Query 417 GACTGAGCTAACGACCCAATT 437 |||||||||||||| || || Sbjct 5220 AACTGAGCTAACGACACATTT 5200 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||| |||||| ||| ||||||||| ||||| ||||||||||| ||||||||| Sbjct 4525 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 4466 Query 417 GACTGAGCTAACGACCCA 434 |||||||||||||| || Sbjct 4465 AACTGAGCTAACGACACA 4448 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 357 TTGGTGGGTCGTGAAGGATTCGAACCTTCGACCAACGGATTAAAAGTCCGCTGCTCTACC 416 |||||| |||||| ||| ||||||||| ||||| ||||||||||| ||||||||| Sbjct 5028 TTGGTGTGTCGTGTAGGGTTCGAACCTACGACCTTGAGATTAAAAGTCTCTTGCTCTACC 4969 Query 417 GACTGAGCTAACGACCCA 434 |||||||||||||| || Sbjct 4968 AACTGAGCTAACGACACA 4951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100666869742860