Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_003356.1
Length=42575
Score E
Sequences producing significant alignments: (Bits) Value
seq2410 91.5 4e-14
seq1262 87.8 5e-13
seq4088 80.6 7e-11
>seq2410
Length=3205
Score = 91.5 bits (100), Expect = 4e-14
Identities = 68/80 (85%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392
|||||||||||||||||| ||| ||||||| ||||||||||||| | ||||| ||||||
Sbjct 871 ATGCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCG 930
Query 17393 AATCCAGTACAACGCGCCAC 17412
||||| |||| || ||||
Sbjct 931 AATCCTATACAGCGTACCAC 950
Score = 89.7 bits (98), Expect = 1e-13
Identities = 66/76 (87%), Gaps = 1/76 (1%)
Strand=Plus/Plus
Query 17159 GCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217
|||| |||||| ||| ||| ||||| | ||||||||||||| ||||||||||||||| |
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 17218 CCAGCAAGGGCCACCA 17233
|||||| |||||||||
Sbjct 1011 CCAGCAGGGGCCACCA 1026
>seq1262
Length=72559
Score = 87.8 bits (96), Expect = 5e-13
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 17157 CGGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 17215
|||||| |||||| ||| ||| ||||| ||||||||||||| |||||||||||||||
Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836
Query 17216 ATCCAGCAAGGGCCACCA 17233
||||||| |||||||||
Sbjct 63835 GTCCAGCAGGGGCCACCA 63818
>seq4088
Length=5036
Score = 80.6 bits (88), Expect = 7e-11
Identities = 65/79 (82%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392
||||| |||||||||||| ||| ||||||| ||||||||||| | |||| ||||||||
Sbjct 4246 ATGCGCTGTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCG 4305
Query 17393 AATCCAGTACAACGCGCCA 17411
| ||||| || ||| |||
Sbjct 4306 AGTCCAGCACGGCGCACCA 4324
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 136068212210106
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |