Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003356.1 Length=42575 Score E Sequences producing significant alignments: (Bits) Value seq2410 91.5 4e-14 seq1262 87.8 5e-13 seq4088 80.6 7e-11 >seq2410 Length=3205 Score = 91.5 bits (100), Expect = 4e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392 |||||||||||||||||| ||| ||||||| ||||||||||||| | ||||| |||||| Sbjct 871 ATGCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCG 930 Query 17393 AATCCAGTACAACGCGCCAC 17412 ||||| |||| || |||| Sbjct 931 AATCCTATACAGCGTACCAC 950 Score = 89.7 bits (98), Expect = 1e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 17159 GCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 17217 |||| |||||| ||| ||| ||||| | ||||||||||||| ||||||||||||||| | Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 17218 CCAGCAAGGGCCACCA 17233 |||||| ||||||||| Sbjct 1011 CCAGCAGGGGCCACCA 1026 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 5e-13 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 17157 CGGCCCTTTAGCTAAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 17215 |||||| |||||| ||| ||| ||||| ||||||||||||| ||||||||||||||| Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836 Query 17216 ATCCAGCAAGGGCCACCA 17233 ||||||| ||||||||| Sbjct 63835 GTCCAGCAGGGGCCACCA 63818 >seq4088 Length=5036 Score = 80.6 bits (88), Expect = 7e-11 Identities = 65/79 (82%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 17333 ATGCGTTGTTAGCTCAGTCGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCG 17392 ||||| |||||||||||| ||| ||||||| ||||||||||| | |||| |||||||| Sbjct 4246 ATGCGCTGTTAGCTCAGTTGGATAGAGCAACCGCCTTCTAAGCGGTAGGTCGCTGGTTCG 4305 Query 17393 AATCCAGTACAACGCGCCA 17411 | ||||| || ||| ||| Sbjct 4306 AGTCCAGCACGGCGCACCA 4324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 136068212210106