Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq2021 250 2e-61 seq12187 206 2e-48 seq4853 194 2e-44 >seq2021 Length=2943 Score = 250 bits (276), Expect = 2e-61 Identities = 923/1430 (65%), Gaps = 45/1430 (3%) Strand=Plus/Minus Query 36790 TCAACTGTGAATTTTATAGGATTTGATGCCGATTTTGTTCTCATATAATACATTCCAGTT 36849 || || || |||| ||||| ||| | || | || || | || ||||||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 36850 TTTAGCCCCAATCTCCATCCGTAAAAATGCATACTGGTCAGTTTTGCGTATGTAGGATTA 36909 || | || | |||| ||||| ||||| || |||||||| | || | || | | Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 36910 TCTATATATATTGTCATTGATTGACTTTGATCTATAAACGCACCTCTGTCGGCTGCCATT 36969 | | || ||| | | |||||||||||||||||||| ||||| | || ||||||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 36970 TCTAAAATACATTTTTG-AGATATCTCCCAAACCGTTTTATATATTTGTTTTATATTATC 37028 | ||| | || | || ||| ||||||||||| || || || | | | || | Sbjct 1969 T-TAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTG 1911 Query 37029 TGGTAAA---TCTAAATGTTGAATAGAACCATTATGTAACACAATTGTATTCTTTATGTC 37085 |||| | || | || ||| || || ||| | | | ||| ||| || || || Sbjct 1910 CGGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATC 1851 Query 37086 ATTATTCCACATATTTCTACTTA--TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGA 37143 || || ||| | || | | | | | || | | | || |||| || ||||| Sbjct 1850 ATCATCCCATAGAT--CAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGG 1793 Query 37144 AAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATGGACTCA 37203 || || ||||| ||||| | | |||||| ||||| |||||| || |||| || ||| Sbjct 1792 AATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCA 1733 Query 37204 TTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTATTT 37263 ||||| | | ||||| | || || || |||||||||||||| || || | ||| Sbjct 1732 TTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTA 1673 Query 37264 CTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGG 37323 | || |||||| || |||| ||| || || || ||||| ||||| ||| || || Sbjct 1672 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 1613 Query 37324 TTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTC 37383 | ||| |||||||||||| |||| ||| || || || | || || | ||| || Sbjct 1612 GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTT 1553 Query 37384 TCATAAG---GTCCG--TAAATT------------------TTAGCTAGTTCGCAACTAG 37420 |||||| | ||| ||| || | ||| | || || || | Sbjct 1552 TCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGG 1493 Query 37421 ATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTT 37480 ||| | || ||||||| || ||||| || |||||| ||||| | |||||| | Sbjct 1492 CTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCT 1433 Query 37481 CGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAACCCTGAACACCGATAC 37540 | || || ||| ||| | || | ||| || |||| || || || || || || |||| Sbjct 1432 CACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATAC 1373 Query 37541 CTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATTGATAT 37600 ||||||| | ||| | |||| || | | || || || || |||||||| | Sbjct 1372 CTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGT 1313 Query 37601 CTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA-- 37658 |||| ||||| || | ||| || ||||| | || | | | | || | || Sbjct 1312 CTATGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAAT 1253 Query 37659 CATAAAT-ACGTTATTATTAACAAATTTACTCAACGAAATAGATCCTAGATTACATACAG 37717 ||||| | || || ||||| || | | | ||| || ||| |||||| |||| Sbjct 1252 CATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAG 1193 Query 37718 CAACTTCATCTTCGTTACTAA-ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATT 37776 ||| |||||| || | || ||| || ||| || || || | ||| || | | || Sbjct 1192 CAATTTCATC-CGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATA 1134 Query 37777 GTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAATCTTTATATAGTATATACGGC 37836 || || | ||| |||||| || |||||||| ||| ||||| || ||||| || Sbjct 1133 GTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGA 1074 Query 37837 GTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCATAAACTTCTTGCTTTAAC-GAT 37895 || || ||| | |||||||| ||||| | ||| || || |||||||| | Sbjct 1073 GTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTG 1014 Query 37896 CGCTT-TAAtttttttCTTTGTTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCC 37953 || || | ||| || |||| ||| || ||| | ||| ||| ||| Sbjct 1013 CGATTGGCACGACCTTC--ACGCTCATATTTCTCATA-AAGTTGCTCGAATTCTTCACCC 957 Query 37954 CATACATCGCATAATCCTGGACATTCGCATGGACACATTAGAGACCATTCTTCATCTTTT 38013 || || || || ||| || || | | ||| ||||| || ||||| || ||||| Sbjct 956 CAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCC 897 Query 38014 TCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTA 38073 || || |||| ||| ||||| || |||| ||||| ||| |||||||||| | | | Sbjct 896 TCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGA 837 Query 38074 TATTCTTCGTTCCCTACATTCTTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 || ||||| || || ||| |||||| || | ||| || |||||||| | |||||| Sbjct 836 TACTCTTCCTTGCCAGTATT-TTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCA 778 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGAT 38182 ||||||| ||| || | | || ||||| | ||| | |||||||||| Sbjct 777 GGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGAT 728 >seq12187 Length=3570 Score = 206 bits (228), Expect = 2e-48 Identities = 471/699 (67%), Gaps = 15/699 (2%) Strand=Plus/Minus Query 11458 TAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCATACCTATAAG 11517 ||| | ||| || || || |||||||| | |||||| | |||||||| || || || Sbjct 1723 TAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAG 1664 Query 11518 ATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCATCA---ATGAT 11574 || ||| || | ||| | || | |||||| | |||||| || || || ||| ||||| Sbjct 1663 ATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGAT 1604 Query 11575 TATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTAAACACGC 11634 | || | ||| || | ||| || | |||||||| ||||| ||||| || Sbjct 1603 T-TCAAG--TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGC 1547 Query 11635 AAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGG 11694 ||| |||||||| || |||||||| | || || ||||| || ||||| | || || Sbjct 1546 AAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGG 1487 Query 11695 CATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCC 11754 ||| | || ||||| || | ||| || |||| || || ||| ||||| || || Sbjct 1486 CATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACC 1427 Query 11755 CTCCACAGCTGCAAATGCTACTACTCTTTCTCCATA--TACCTTGTTGCTA-GATATCCA 11811 ||| |||||||||||||||| | | || ||| | | | || | | || ||||| Sbjct 1426 CTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCA 1367 Query 11812 TTTTCTGGCCCAATCAGCTTTCTTTTTTAC-GCATTCCATTGTTTCTATAGCGTTAAAT- 11869 ||||||||||||| ||||| || || ||| || ||||| || ||||||||| Sbjct 1366 GGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTTAAATA 1308 Query 11870 -AAATGCATTTTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACATTTC 11928 ||| || || | | | || | || || || || || || | || |||||||| Sbjct 1307 GAAAATCA--CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTC 1250 Query 11929 TGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTG 11988 || || | ||||||||| || ||||| || ||||| ||||| || ||||| | || Sbjct 1249 AGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTG 1190 Query 11989 TACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAA 12048 ||| || || | || | ||||| ||||| ||||| |||||| | || || Sbjct 1189 TACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAA 1130 Query 12049 AAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATC 12108 |||||| | | ||| |||||| | | || | | || ||||| ||||| |||| Sbjct 1129 AAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATT 1070 Query 12109 TAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAA 12147 | ||| || ||||||| ||||| || || |||||||| Sbjct 1069 CATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAA 1031 >seq4853 Length=2014 Score = 194 bits (214), Expect = 2e-44 Identities = 683/1053 (65%), Gaps = 13/1053 (1%) Strand=Plus/Plus Query 37202 CATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGGCTAT 37261 ||||||| | | ||||| | || || || |||||||||||||| || || | || Sbjct 1 CATTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAAT 60 Query 37262 TTCTCAATCCATGTGTATTAATTCTCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTG 37321 | | || |||||| || |||| ||| || || || ||||| ||||| ||| || | Sbjct 61 TACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAG 120 Query 37322 GGTTCTTTAACCACATATCATATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATG 37381 | | ||| |||||||||||| |||| ||| || || || | || || | ||| | Sbjct 121 GTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAG 180 Query 37382 TCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATA 37441 | ||||| || || | | ||| | || || || | ||| | || ||||||| | Sbjct 181 TTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAA 240 Query 37442 TTGTTTCGAAAATTTGTATATTTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCA 37501 | ||||| || |||||| ||||| | |||||| || || || ||| ||| | || Sbjct 241 TCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCA 300 Query 37502 ATAATATAAACACATCAGCCAAACCCTGAACACCGATACCTATGGGTCTATGTTTCTTAT 37561 | ||| || |||| || || || || || || ||||||||||| | ||| | ||| Sbjct 301 TGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATAT 360 Query 37562 TAGATCTAGACGATTCTATCACTGGATAATAATTGATATCTATTATTTTATTTAGATTTT 37621 | || | | || || || || |||||||| ||||| ||||| || | ||| Sbjct 361 TTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTAC 420 Query 37622 TAACTAGTATTTTCGTAATTATTCTCAACTTGTCGAA--CATAAAT-ACGTTATTATTAA 37678 || ||||| | || | | | | || | || ||||| | || || | Sbjct 421 GTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGA 480 Query 37679 CAAATTTACTCAACGAAATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAA 37738 |||| || | | | ||| || ||| |||||| ||||||| |||||| || | || Sbjct 481 CAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATC-CGGTGCCGAA 539 Query 37739 -ATTGTATAATCTCTGTACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTG 37797 ||| || ||| || || || | ||| || | | || || || | ||| |||||| Sbjct 540 TATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTA 599 Query 37798 GATTTTTTATTACAAGAATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCC 37857 || |||||||| ||| ||||| || ||||| || || || ||| | ||||||| Sbjct 600 CTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCC 659 Query 37858 TCGATAATAGATTTCCATAAACTTCTTGCTTTAAC-GATCGCTT-TAAtttttttCTTTG 37915 || ||||| | ||| || || |||||||| | || || | ||| Sbjct 660 TCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTC--AC 717 Query 37916 TTTCGTATTCTATATATAATTTGTTAAAATCATTC-CCCCATACATCGCATAATCCTGGA 37974 || |||| ||| || ||| | ||| ||| ||||| || || || ||| || Sbjct 718 GCTCATATTTCTCATA-AAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGG 776 Query 37975 CATTCGCATGGACACATTAGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAA 38034 || | | ||| ||||| || ||||| || ||||| || || |||| ||| || || Sbjct 777 CACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAG 836 Query 38035 TCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTC 38094 || |||| ||| | ||| ||||||||| | | ||| ||||| || || ||| Sbjct 837 TCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATT- 895 Query 38095 TTTCTT-AAGCTTAGAAAATCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACAT 38153 |||||| || | ||| || |||||||| | |||||| ||||| | ||| || | | Sbjct 896 TTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAA 955 Query 38154 TGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCT 38213 || ||||| | ||| | |||||||||| | || | | |||||| | | | Sbjct 956 GGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACG 1015 Query 38214 TAACATAGGTACTATACCATTAGATTTGCCGTT 38246 | |||||| |||| ||||||||| |||| || Sbjct 1016 CAGCATAGGCACTAAACCATTAGAGGTGCCATT 1048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468342959668560