Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2021 390 1e-103 seq4853 354 1e-92 seq12187 273 3e-68 >seq2021 Length=2943 Score = 390 bits (432), Expect = 1e-103 Identities = 968/1468 (66%), Gaps = 41/1468 (3%) Strand=Plus/Minus Query 64833 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 64892 |||| || ||||| || | | || || || ||||| || | ||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 64893 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 64952 || | || |||| ||||| ||||| || || ||||| |||| |||| || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 64953 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 65012 || | ||| || || | |||||||||||||| || || || || | || || |||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 65013 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 65071 || || |||||| | ||| ||||||| || || || || || | | || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 65072 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 65129 | | | | |||| || |||||||||| || | ||||| ||| || || ||| Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 65130 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 65189 |||| ||||| | |||||| ||| | | || | ||| |||| || || || ||| Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790 Query 65190 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 65249 || ||||||||||| | || || || |||||| ||||| || || | ||| |||||| Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730 Query 65250 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 65309 || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| | Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670 Query 65310 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 65367 | || ||||| | ||||| || || || |||||||||| ||||| | ||| Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612 Query 65368 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 65427 |||| ||| || || ||| | ||| || |||| || | Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552 Query 65428 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 65464 | || || || ||| ||||||||| | ||||| || || Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492 Query 65465 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 65524 || || ||||| |||||||| ||||| || || | | |||||| | ||||||| Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432 Query 65525 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 65584 || ||| |||||||| | ||| || || || ||||| |||||||| || |||||||| Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372 Query 65585 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 65644 || || | ||| | | |||| || | || || || | || || ||||| || || Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312 Query 65645 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 65701 ||| ||||| || | ||| | | |||||| || | || || || ||||| ||| Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255 Query 65702 ATCAAATCGCTCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 65758 |||| | || ||| | |||||||| || | ||||| || || | ||||||||| Sbjct 1254 ATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAAC 1195 Query 65759 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 65818 || | |||| | ||| ||||| || || |||||||| | ||| || |||||||| Sbjct 1194 AGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135 Query 65819 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 65878 || |||| ||| |||||||||||||| ||||| ||||||||||| || || |||| Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075 Query 65879 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 65938 ||| |||||||| | ||||| |||||||| || ||| | | | |||| || | | Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015 Query 65939 -AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 65997 |||| | | | ||| | || ||| ||| | | | ||||| || || |||| Sbjct 1014 GCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956 Query 65998 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 66057 |||| | | | ||| || || | | || ||||| | ||||| || || || ||| Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896 Query 66058 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTAT 66117 ||| |||||||| || | || || ||||| ||||| ||||||||||| | | || Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836 Query 66118 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACG 66177 || || || || ||||| || || | ||| | ||| | | ||||| | ||||| | Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776 Query 66178 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 66237 |||| || || ||||| | | || || |||||| ||||||||||| | ||| | | Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCG 716 Query 66238 CGGTGTTATTATAAACTCTCAACATTGG 66265 | |||||| | || | || ||| || Sbjct 715 CCACGTTATTGAACACACGCAGCATAGG 688 >seq4853 Length=2014 Score = 354 bits (392), Expect = 1e-92 Identities = 867/1305 (66%), Gaps = 17/1305 (1%) Strand=Plus/Plus Query 65388 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 65447 |||| ||| || || ||| | || || |||| || || || || || ||||||| Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203 Query 65448 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 65507 || | ||||| || || || || ||||| |||||||| ||||| || || | | |||| Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263 Query 65508 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 65567 || | ||||||| || ||| |||||||| | ||| || || || ||||| ||| Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323 Query 65568 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 65627 ||||| || |||||||| || || | ||| | | |||| || | || || || | Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383 Query 65628 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 65684 || || ||||| || ||||| ||||| || | ||| | | |||||| || | || Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440 Query 65685 TCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---TTACAAACATGTTCAATGCAACA 65741 || || ||||| ||||||| | || ||| | |||||||| || | ||||| Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATT 500 Query 65742 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 65801 || || | ||||||||| || | |||| | ||| ||||| || || |||||||| Sbjct 501 GAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCAT 560 Query 65802 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 65861 | ||| || |||||||| || |||| ||| |||||||||||||| ||||| |||||| Sbjct 561 AAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCC 620 Query 65862 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 65921 ||||| || || ||||||| |||||||| | |||| |||||||| || ||| | | Sbjct 621 TTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAG 680 Query 65922 ACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 65980 | |||| || | | |||| | | | ||| | || ||| ||| | | | Sbjct 681 GTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTG 739 Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||| || || |||||||| | | | ||| || || | | || ||||| | || Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799 Query 66041 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 66099 ||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| | Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAGA 858 Query 66100 ATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 66159 ||||||||| | | || || || || || ||||| || || | ||| | ||| | | Sbjct 859 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 918 Query 66160 TAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 66219 ||||| | ||||| |||||||| || ||||| | | || || |||||| |||| Sbjct 919 ATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTC 978 Query 66220 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 66279 ||||||| | ||| | || |||||| | || | || ||| || | | |||||| | Sbjct 979 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAG 1038 Query 66280 ATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT--ATTACTAATTGATAG 66337 | || ||||| || || | || | || | || || || | | | ||| || Sbjct 1039 AGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CAG 1096 Query 66338 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 66397 || || || ||||| || ||||| | |||||| | | || | | | || || Sbjct 1097 GCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATACC 1156 Query 66398 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 66457 ||| || ||| | | ||| | || || |||||| |||| ||| | || || || Sbjct 1157 CTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTGT 1216 Query 66458 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 66517 | ||| |||| || ||||| ||||| ||||| | || || |||| |||||| Sbjct 1217 GGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGTA 1276 Query 66518 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 66577 || || || || | || |||||| || || || || || |||||||| | | Sbjct 1277 GGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTAG 1336 Query 66578 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 66637 || ||||| | || || || | || |||||||| || ||||| ||| | || Sbjct 1337 ATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTGT 1396 Query 66638 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 || || || || || || || |||||| || || |||||||| Sbjct 1397 CTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441 Score = 102 bits (112), Expect = 1e-16 Identities = 118/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 66803 aaaTAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAATGGC 66862 |||| |||||| ||||||||||||| ||| || || || |||||||| || | ||| || Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775 Query 66863 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 66922 ||| |||| ||| ||||| || ||||| || |||| || |||| | |||||||||| Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835 Query 66923 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 66961 | ||| | |||||| ||| | || | ||||| || Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874 >seq12187 Length=3570 Score = 273 bits (302), Expect = 3e-68 Identities = 487/706 (69%), Gaps = 11/706 (2%) Strand=Plus/Minus Query 35992 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 36051 ||| || ||||| ||||||||| ||| | || |||||||| || || || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 36052 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT 36111 || || || |||| ||||| |||||||| || || || || ||| || | Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598 Query 36112 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 36171 || || ||| ||| | || |||||||| ||||||||||| || || || || Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538 Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 || | || ||||| | ||| | || ||||| || || || || ||||| || || Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||| || |||||||| || || || || || ||| |||||||| || || || || Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGCAC-TGTC-ATGT-ATCCACTTTTGAGC 36348 ||||| || |||| | ||| ||| || ||| | || ||| ||||| || Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGC 1358 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 |||||| |||||||| || ||| ||||| || || || || ||||| ||| | | Sbjct 1357 CCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACG 1298 Query 36409 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 36464 || || | || || |||||| |||||||||| || |||||||| || || | Sbjct 1297 TTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCA 1242 Query 36465 TGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTG 36524 ||||| ||||| ||||| || || || ||||| | ||||| || || ||||||||| Sbjct 1241 CATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTT 1182 Query 36525 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 36584 | || || ||| | ||||||||||| || || || ||| ||| || ||||| |||| Sbjct 1181 GGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCA 1122 Query 36585 ATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTT 36644 | ||||| |||||||| | || || ||| | ||| | ||| ||||| ||||| | Sbjct 1121 AAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCT 1062 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 36690 | ||| ||||||||| ||||||||||||||||| || || ||||| Sbjct 1061 TGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657917354909160