Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003444.1 Length=37074 Score E Sequences producing significant alignments: (Bits) Value seq27062 100 7e-17 seq6609 86.0 1e-12 >seq27062 Length=1613 Score = 100 bits (110), Expect = 7e-17 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 19411 GCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATTCAACGACATCTGT 19470 |||||| || |||||| ||||| || || || || || ||||| ||||||| ||| Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554 Query 19471 CTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTT 19530 | ||| |||||||||||||| | || |||||||| |||||||||||||||| |||| Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494 Query 19531 AAT 19533 ||| Sbjct 1493 AAT 1491 >seq6609 Length=13971 Score = 86.0 bits (94), Expect = 1e-12 Identities = 543/857 (63%), Gaps = 41/857 (5%) Strand=Plus/Plus Query 19105 ttttcatttttgtttctcatttttg----atgatgtattttgggcgatgtttgctttCAA 19160 ||||| ||||| ||||| |||| | || || ||||| || | || ||| |||| Sbjct 5589 TTTTCTTTTTT-TTTCTAATTTATCTCTTATAATATATTTGGGTCTATTTTTAACTTCAT 5647 Query 19161 TATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCA 19220 |||| ||||| ||||||||||| || | || || | || || | ||| | |||| || Sbjct 5648 TATATATTCTTCCTATATATTCTCCCATTACTCCTAATCCTATTAATTGTATTCCA-CCT 5706 Query 19221 AGAAAAGT-ATTGATACAAGCAGGGAGGGAT-ACCCGC-GTACTGGGTTACCAAAGACAA 19277 | ||| || |||| ||||| | || |||| ||| || || | || ||||| | | Sbjct 5707 ATAAATGTAATTGCTACAAATAAAGACGGATAACCAGCAATATT--ATTTCCAAATAACA 5764 Query 19278 GGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTA 19337 | |||||||| || ||| | | ||| ||||| || | || || || | Sbjct 5765 TTTTATCTATAATTATTTTAAATCCAAAAATAAAAGAAATAGAGGCCATTAAAAATCCGA 5824 Query 19338 TATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGAT 19397 | ||| ||||| | ||| |||| || ||| || || ||||| | |||| || Sbjct 5825 TGTAACACCATATTCTAAGTGGAATTGTGCTAAATGAAGTTATTCCTTCTACCGCCAAAT 5884 Query 19398 TCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATT 19457 ||||||| ||||| |||||||||||| || | |||||||| | | ||||| Sbjct 5885 TCCATAACTTCCATGCATTAAATTTTGTTTCACCTTCTTTCCGCTCTGCTCTTTTATATT 5944 Query 19458 CAACGACATCTGTC---------TGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAA 19508 ||| ||| |||| | | ||| ||||| || | || |||||||| || | Sbjct 5945 CAA--TCAT-TGTCGTTTCTTCATAAAAACCAACCCAACTAAATAATCCTTTCATAAATA 6001 Query 19509 GATTGCGCTCAGGCAACAGTTTAAT---GTTCTCCACAACCTCACGAGACATGAGTCGAA 19565 ||| | || || ||| || ||| | |||| | | | || | || | Sbjct 6002 AATTACTTTCGTTTAATTTTTTTATCTCGTTAACGACAATTTTATCA---ATTAATCTAT 6058 Query 19566 AATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACC 19625 |||| || |||||||| ||| |||| || ||||| || || || || Sbjct 6059 AATCACCAACATTTTCAGGGATTTTTGTTTCAGAAATAACATTGTGAAATTTGTAAAAAA 6118 Query 19626 ACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCA 19685 ||||| || || | ||| | ||| ||| || || | ||| || | | Sbjct 6119 GTTCAGCAGTTTTTCTTTTAAAATAAGTATCTGTTTCACGATCACTTCTTTTTGCTAAAA 6178 Query 19686 CCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTT 19745 | | | | |||| | | ||| |||||||| | || || | || || ||||||| Sbjct 6179 CTACTTTTGAACCTTCATTCCATTTTTCAATCATCAATGGAATTAATTCTATTGGATCTT 6238 Query 19746 GCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATA 19805 | || || |||||||| || || || |||||| | | || || | |||||| |||| Sbjct 6239 GAAGATCTACATCAATTGGGATAACTGCATCGGAATTGACCTGATCAAGCCCTGCGAATA 6298 Query 19806 AGGCTGGTTCTTTACCAAAGTTGCGTG-TAAA-TGACAGCGGAACAACTAGTGGGTCTGA 19863 | || |||||| ||||| || | || |||| | | | | ||| | | || || Sbjct 6299 AAGCATTTTCTTTTCCAAAATTTCTTGATAAATTTATAACAGAAACATCATTG-----GA 6353 Query 19864 AA---CAGCCAGCGC-GTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGA 19919 || || || | ||||| || || ||| ||||||||||||| |||||||| | Sbjct 6354 AATTTCATGAAGTTCTTTTAATTTTTTTCT-TGTTTCATCTTTACTTCCATCATTTATAA 6412 Query 19920 ATACAATTTCTACTTCA 19936 ||| |||||||| |||| Sbjct 6413 ATAAAATTTCTATTTCA 6429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 118471502630968