Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_003444.1
Length=37074
Score E
Sequences producing significant alignments: (Bits) Value
seq27062 100 7e-17
seq6609 86.0 1e-12
>seq27062
Length=1613
Score = 100 bits (110), Expect = 7e-17
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 19411 GCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATTCAACGACATCTGT 19470
|||||| || |||||| ||||| || || || || || ||||| ||||||| |||
Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554
Query 19471 CTGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAAGATTGCGCTCAGGCAACAGTTT 19530
| ||| |||||||||||||| | || |||||||| |||||||||||||||| ||||
Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494
Query 19531 AAT 19533
|||
Sbjct 1493 AAT 1491
>seq6609
Length=13971
Score = 86.0 bits (94), Expect = 1e-12
Identities = 543/857 (63%), Gaps = 41/857 (5%)
Strand=Plus/Plus
Query 19105 ttttcatttttgtttctcatttttg----atgatgtattttgggcgatgtttgctttCAA 19160
||||| ||||| ||||| |||| | || || ||||| || | || ||| ||||
Sbjct 5589 TTTTCTTTTTT-TTTCTAATTTATCTCTTATAATATATTTGGGTCTATTTTTAACTTCAT 5647
Query 19161 TATAGATTCTGCCTATATATTCACCGAGAACACCAATCCCGATCAGTTGCACTCCACCCA 19220
|||| ||||| ||||||||||| || | || || | || || | ||| | |||| ||
Sbjct 5648 TATATATTCTTCCTATATATTCTCCCATTACTCCTAATCCTATTAATTGTATTCCA-CCT 5706
Query 19221 AGAAAAGT-ATTGATACAAGCAGGGAGGGAT-ACCCGC-GTACTGGGTTACCAAAGACAA 19277
| ||| || |||| ||||| | || |||| ||| || || | || ||||| | |
Sbjct 5707 ATAAATGTAATTGCTACAAATAAAGACGGATAACCAGCAATATT--ATTTCCAAATAACA 5764
Query 19278 GGGTGTCTATAATCATCCATGCACCATATAAAAATGAAATGCTTGCAACAAACAAACCTA 19337
| |||||||| || ||| | | ||| ||||| || | || || || |
Sbjct 5765 TTTTATCTATAATTATTTTAAATCCAAAAATAAAAGAAATAGAGGCCATTAAAAATCCGA 5824
Query 19338 TATAAGTCCATACGCGAAGAGGAAAGGTTGAAAAACTTGTGATACCTTCCAGTGCCAGAT 19397
| ||| ||||| | ||| |||| || ||| || || ||||| | |||| ||
Sbjct 5825 TGTAACACCATATTCTAAGTGGAATTGTGCTAAATGAAGTTATTCCTTCTACCGCCAAAT 5884
Query 19398 TCCATAATTTCCAGCCATTAAATTTTGAGATGCCAGCAACGCGCTCTGCGCGTACATATT 19457
||||||| ||||| |||||||||||| || | |||||||| | | |||||
Sbjct 5885 TCCATAACTTCCATGCATTAAATTTTGTTTCACCTTCTTTCCGCTCTGCTCTTTTATATT 5944
Query 19458 CAACGACATCTGTC---------TGACCACCCACCCAGCTCAGTATGCCTTTCATGAAAA 19508
||| ||| |||| | | ||| ||||| || | || |||||||| || |
Sbjct 5945 CAA--TCAT-TGTCGTTTCTTCATAAAAACCAACCCAACTAAATAATCCTTTCATAAATA 6001
Query 19509 GATTGCGCTCAGGCAACAGTTTAAT---GTTCTCCACAACCTCACGAGACATGAGTCGAA 19565
||| | || || ||| || ||| | |||| | | | || | || |
Sbjct 6002 AATTACTTTCGTTTAATTTTTTTATCTCGTTAACGACAATTTTATCA---ATTAATCTAT 6058
Query 19566 AATCTCCGACATTTTCCTCGATCTTTGGGGTGCTTATTTTGTTGTGTAACTTATAGAACC 19625
|||| || |||||||| ||| |||| || ||||| || || || ||
Sbjct 6059 AATCACCAACATTTTCAGGGATTTTTGTTTCAGAAATAACATTGTGAAATTTGTAAAAAA 6118
Query 19626 ACTCAGCTGTCTTACGTTTCAGTCGTCCATCAGTTGAGCGGTCTGAACGTTTAGCAAGCA 19685
||||| || || | ||| | ||| ||| || || | ||| || | |
Sbjct 6119 GTTCAGCAGTTTTTCTTTTAAAATAAGTATCTGTTTCACGATCACTTCTTTTTGCTAAAA 6178
Query 19686 CCATGTCAGCACCTGCCTGCCACTTTTCAATAAGATGAGGGATGACCTCAATAGGATCTT 19745
| | | | |||| | | ||| |||||||| | || || | || || |||||||
Sbjct 6179 CTACTTTTGAACCTTCATTCCATTTTTCAATCATCAATGGAATTAATTCTATTGGATCTT 6238
Query 19746 GCAGGTCGACATCAATAGGAATTACAGCATCGCCGCTTGCATGGTCTAACCCTGCAAATA 19805
| || || |||||||| || || || |||||| | | || || | |||||| ||||
Sbjct 6239 GAAGATCTACATCAATTGGGATAACTGCATCGGAATTGACCTGATCAAGCCCTGCGAATA 6298
Query 19806 AGGCTGGTTCTTTACCAAAGTTGCGTG-TAAA-TGACAGCGGAACAACTAGTGGGTCTGA 19863
| || |||||| ||||| || | || |||| | | | | ||| | | || ||
Sbjct 6299 AAGCATTTTCTTTTCCAAAATTTCTTGATAAATTTATAACAGAAACATCATTG-----GA 6353
Query 19864 AA---CAGCCAGCGC-GTTAATAATTGACTCTGTGGCATCTTTACTTCCGTCATTTATGA 19919
|| || || | ||||| || || ||| ||||||||||||| |||||||| |
Sbjct 6354 AATTTCATGAAGTTCTTTTAATTTTTTTCT-TGTTTCATCTTTACTTCCATCATTTATAA 6412
Query 19920 ATACAATTTCTACTTCA 19936
||| |||||||| ||||
Sbjct 6413 ATAAAATTTCTATTTCA 6429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 118471502630968
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |