Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 131 2e-25
seq2021 131 2e-25
>seq4853
Length=2014
Score = 131 bits (144), Expect = 2e-25
Identities = 247/361 (68%), Gaps = 7/361 (2%)
Strand=Plus/Plus
Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509
|||||||| || || ||||| | ||||| |||||||||||||| |||||||| ||
Sbjct 309 AATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGC 368
Query 153510 tttGCAGCTTCAACAG--GATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGA 153567
|| || || | ||| | ||| ||||| ||| || ||||| || ||| || |
Sbjct 369 TTGGC--CTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTA 426
Query 153568 CATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCATTAA---TGATATATT 153624
|| ||| | || | | || ||||||| | || | ||| | |
Sbjct 427 CAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACA 486
Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684
| |||| ||||| || || || || ||||| ||| |||| || || || |||||| ||
Sbjct 487 TATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTA 546
Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744
| ||||| | || ||||||||||| || || ||| ||| |||||| || ||||
Sbjct 547 CAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGC 606
Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804
| |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| |||||||
Sbjct 607 GATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAA 666
Query 153805 T 153805
|
Sbjct 667 T 667
>seq2021
Length=2943
Score = 131 bits (144), Expect = 2e-25
Identities = 247/361 (68%), Gaps = 7/361 (2%)
Strand=Plus/Minus
Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509
|||||||| || || ||||| | |||||| |||||||||||||| |||||||| ||
Sbjct 1403 AATGCATCTGCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGC 1344
Query 153510 tttGCAGCTTCAACAG--GATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGA 153567
|| || || | ||| | ||| ||||| ||| || ||||| || ||| || |
Sbjct 1343 TTGGC--CTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTA 1286
Query 153568 CATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCATTAA---TGATATATT 153624
|| ||| | || | | || ||||||| | || | ||| | |
Sbjct 1285 CAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACA 1226
Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684
| |||| ||||| || || || || ||||| ||| |||| || || || |||||| ||
Sbjct 1225 TATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTA 1166
Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744
| ||||| | || ||||||||||| || || ||| ||| |||||| || ||||
Sbjct 1165 CAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGC 1106
Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804
| |||||||| ||||| || ||||| ||||| ||||| ||||| | ||| |||||||
Sbjct 1105 GATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAA 1046
Query 153805 T 153805
|
Sbjct 1045 T 1045
Score = 87.8 bits (96), Expect = 2e-12
Identities = 125/176 (71%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780
|| |||||||| | |||||| || || ||| || ||||| ||||| || |||||
Sbjct 2146 ACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTCTTC 2087
Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCC 152840
| ||| || ||| ||||| | || | || | || ||| | || | || || |||
Sbjct 2086 AAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCAGCC 2027
Query 152841 ATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCAT 152896
| | | ||||||||||||||||||||| ||||| || || | ||| ||||||||
Sbjct 2026 ACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495871471360800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |