Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq4853 131 2e-25 seq2021 131 2e-25 >seq4853 Length=2014 Score = 131 bits (144), Expect = 2e-25 Identities = 247/361 (68%), Gaps = 7/361 (2%) Strand=Plus/Plus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| || || ||||| | ||||| |||||||||||||| |||||||| || Sbjct 309 AATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGC 368 Query 153510 tttGCAGCTTCAACAG--GATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGA 153567 || || || | ||| | ||| ||||| ||| || ||||| || ||| || | Sbjct 369 TTGGC--CTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTA 426 Query 153568 CATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCATTAA---TGATATATT 153624 || ||| | || | | || ||||||| | || | ||| | | Sbjct 427 CAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACA 486 Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 | |||| ||||| || || || || ||||| ||| |||| || || || |||||| || Sbjct 487 TATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTA 546 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | || ||||||||||| || || ||| ||| |||||| || |||| Sbjct 547 CAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGC 606 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 | |||||||| ||||| || ||||| ||||| ||||| ||||| ||||| ||||||| Sbjct 607 GATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAA 666 Query 153805 T 153805 | Sbjct 667 T 667 >seq2021 Length=2943 Score = 131 bits (144), Expect = 2e-25 Identities = 247/361 (68%), Gaps = 7/361 (2%) Strand=Plus/Minus Query 153450 AATGCATCGGCCAAACCTTGAATGCCAATGCCTATGGGACGATGGCGCATATTAGAtttt 153509 |||||||| || || ||||| | |||||| |||||||||||||| |||||||| || Sbjct 1403 AATGCATCTGCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGC 1344 Query 153510 tttGCAGCTTCAACAG--GATAGAAATTGCGGTCGATAATTTTATTTAAACTAATCACGA 153567 || || || | ||| | ||| ||||| ||| || ||||| || ||| || | Sbjct 1343 TTGGC--CTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTA 1286 Query 153568 CATGTTTCACCACAGAATGCAACAGTTGAAAATCAAACGTTCCATTAA---TGATATATT 153624 || ||| | || | | || ||||||| | || | ||| | | Sbjct 1285 CAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACA 1226 Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 | |||| ||||| || || || || ||||| ||| |||| || || || |||||| || Sbjct 1225 TATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTA 1166 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | || ||||||||||| || || ||| ||| |||||| || |||| Sbjct 1165 CAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGC 1106 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 | |||||||| ||||| || ||||| ||||| ||||| ||||| | ||| ||||||| Sbjct 1105 GATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAA 1046 Query 153805 T 153805 | Sbjct 1045 T 1045 Score = 87.8 bits (96), Expect = 2e-12 Identities = 125/176 (71%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 152721 ACGGTAAATTGCTGGGAATTGGCCGCCGGAAGCGTACGAAAATAGTACATGCCCGTCTTG 152780 || |||||||| | |||||| || || ||| || ||||| ||||| || ||||| Sbjct 2146 ACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTCTTC 2087 Query 152781 AGGCCACGTTGCCAGCCGTACATGTGCACCGACGCCATCTTAGCCAAAGTAGGGTCGGCC 152840 | ||| || ||| ||||| | || | || | || ||| | || | || || ||| Sbjct 2086 AAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCAGCC 2027 Query 152841 ATGTACACGTTAAACGATTGACTTTGATCAATAAATGCGCCTCTATCTGCTGCCAT 152896 | | | ||||||||||||||||||||| ||||| || || | ||| |||||||| Sbjct 2026 ACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCAT 1971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495871471360800