Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq12187 197 1e-45 >seq12187 Length=3570 Score = 197 bits (218), Expect = 1e-45 Identities = 486/729 (67%), Gaps = 20/729 (3%) Strand=Plus/Minus Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733 || |||||| ||| | ||| | ||||| | |||||| | |||||| ||||||| |||| Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690 Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793 || | | |||||||| || || || || ||||| | || || | ||| |||| | Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630 Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATC--TCATTAGAAGGAGGATATT 13851 ||||| |||||||| ||| || || | || | ||| | ||| | Sbjct 1629 TCTATTTTTACAGCCTCACATATGAT--TTCAAGTATGCGCTCACGACTAGGTTTCTGCA 1572 Query 13852 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 13911 | |||||| || || ||||| ||||| |||||||| | ||| || || | ||| | Sbjct 1571 CCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCA 1512 Query 13912 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 13971 | || || || ||||| | || ||||| | || ||||| || | ||| || || | | Sbjct 1511 GCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGG 1452 Query 13972 CAAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 | || || | | ||| | |||| |||||||| || ||||| ||||| | || || || Sbjct 1451 CGAAACTGCCACTGAAGAAAATA--CCCTCAACAGCTGCAAATGCTATAATACGCTCACC 1394 Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089 ||| || ||| || ||||| | ||||| |||| || || |||| | Sbjct 1393 AAAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGC 1334 Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGT---ACTTGAAATGTA 14146 | || |||||||| || ||||||| | | || | ||| || || | ||||| Sbjct 1333 AGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTA 1277 Query 14147 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACC 14206 || ||||| | | ||| |||||||||||||| | |||||||| || || || ||||| Sbjct 1276 GGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACC 1217 Query 14207 ATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTC 14266 |||||| || | || || | ||||||||| | || | || |||||||||| Sbjct 1216 ATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTC 1157 Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326 ||| || || |||||| || || ||||||||||| | | ||||| || ||| Sbjct 1156 ATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC 1099 Query 14327 TTCATTGT---TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAAC 14383 ||||| | | | ||||| ||| || | |||||| | | ||| ||||| || || Sbjct 1098 -TCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCAC 1040 Query 14384 TGTCCAAAA 14392 ||||||||| Sbjct 1039 TGTCCAAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479541811566600