Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_004002.1
Length=149955
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 197 1e-45
>seq12187
Length=3570
Score = 197 bits (218), Expect = 1e-45
Identities = 486/729 (67%), Gaps = 20/729 (3%)
Strand=Plus/Minus
Query 13674 ACTTTATCACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGAC 13733
|| |||||| ||| | ||| | ||||| | |||||| | |||||| ||||||| ||||
Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690
Query 13734 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTT 13793
|| | | |||||||| || || || || ||||| | || || | ||| |||| |
Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630
Query 13794 TCTATAGACACAGCCTCTTTTATAATAATTGTAATAATC--TCATTAGAAGGAGGATATT 13851
||||| |||||||| ||| || || | || | ||| | ||| |
Sbjct 1629 TCTATTTTTACAGCCTCACATATGAT--TTCAAGTATGCGCTCACGACTAGGTTTCTGCA 1572
Query 13852 TTAGATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAA 13911
| |||||| || || ||||| ||||| |||||||| | ||| || || | ||| |
Sbjct 1571 CCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCA 1512
Query 13912 GTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAG 13971
| || || || ||||| | || ||||| | || ||||| || | ||| || || | |
Sbjct 1511 GCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGG 1452
Query 13972 CAAA--TGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029
| || || | | ||| | |||| |||||||| || ||||| ||||| | || || ||
Sbjct 1451 CGAAACTGCCACTGAAGAAAATA--CCCTCAACAGCTGCAAATGCTATAATACGCTCACC 1394
Query 14030 AAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAA 14089
||| || ||| || ||||| | ||||| |||| || || |||| |
Sbjct 1393 AAAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGC 1334
Query 14090 ATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGT---ACTTGAAATGTA 14146
| || |||||||| || ||||||| | | || | ||| || || | |||||
Sbjct 1333 AGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTA 1277
Query 14147 TGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACC 14206
|| ||||| | | ||| |||||||||||||| | |||||||| || || || |||||
Sbjct 1276 GGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACC 1217
Query 14207 ATAAAAGCATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTC 14266
|||||| || | || || | ||||||||| | || | || ||||||||||
Sbjct 1216 ATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTC 1157
Query 14267 ATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTC 14326
||| || || |||||| || || ||||||||||| | | ||||| || |||
Sbjct 1156 ATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC 1099
Query 14327 TTCATTGT---TGAGTTTTTTCCAATCGGATAAATCCTTAGAAAGATCTACTTCATCAAC 14383
||||| | | | ||||| ||| || | |||||| | | ||| ||||| || ||
Sbjct 1098 -TCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCAC 1040
Query 14384 TGTCCAAAA 14392
|||||||||
Sbjct 1039 TGTCCAAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 479541811566600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |