Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq12187 188 7e-43 >seq12187 Length=3570 Score = 188 bits (208), Expect = 7e-43 Identities = 482/728 (66%), Gaps = 18/728 (2%) Strand=Plus/Minus Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521 || |||||| ||| | ||| | | ||| | |||||| | |||||| ||||||| |||| Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690 Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581 || | | |||||||| || || || || ||||| | || ||| | ||| |||| | Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630 Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641 ||||| |||||||| ||| || | || ||| | | | ||| | | Sbjct 1629 TCTATTTTTACAGCCTCACATATGATT---TCAAGTATGCGCTCACGACTAGGTTTCTGC 1573 Query 13642 AG---ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698 | |||||| || || ||||| ||||| |||||||| | ||| || || | ||| Sbjct 1572 ACCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATC 1513 Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758 || || || || ||||| | || ||||| | || ||||| || | ||| || || | Sbjct 1512 AGCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAG 1453 Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818 ||||| || ||||| || |||||||| || ||||| ||||| | || || ||| Sbjct 1452 GCGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCA 1393 Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878 || || ||| ||| ||||| | ||||| |||| || || |||| | | Sbjct 1392 AAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA 1333 Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGT---ACTTGAAATGTAT 13935 || ||||| || || || |||| | || | ||| || || | ||||| Sbjct 1332 GGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTAG 1276 Query 13936 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCA 13995 || ||||| | | ||| |||||||||||||| | ||||| || || || || |||||| Sbjct 1275 GTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCA 1216 Query 13996 TAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCA 14055 |||||||| | || || | |||||| || | || | ||| |||| |||||| Sbjct 1215 TAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCA 1156 Query 14056 TTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT 14115 || ||||| |||||| || || ||||||||||| | | ||||| || ||| Sbjct 1155 TTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC- 1099 Query 14116 TCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172 ||||| | | | ||||| ||| || | |||||| | | ||| ||||| || ||| Sbjct 1098 TCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACT 1039 Query 14173 GTCCAAAA 14180 |||||||| Sbjct 1038 GTCCAAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478403053704360