Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 188 7e-43
>seq12187
Length=3570
Score = 188 bits (208), Expect = 7e-43
Identities = 482/728 (66%), Gaps = 18/728 (2%)
Strand=Plus/Minus
Query 13462 ACTTTATCACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGAC 13521
|| |||||| ||| | ||| | | ||| | |||||| | |||||| ||||||| ||||
Sbjct 1749 ACCTTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGAC 1690
Query 13522 ATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTT 13581
|| | | |||||||| || || || || ||||| | || ||| | ||| |||| |
Sbjct 1689 ATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGT 1630
Query 13582 TCTATAGACACAGCCTCGTTTATAATAATCTTAATAATGTCATTAGAAGGAGGATATTTT 13641
||||| |||||||| ||| || | || ||| | | | ||| | |
Sbjct 1629 TCTATTTTTACAGCCTCACATATGATT---TCAAGTATGCGCTCACGACTAGGTTTCTGC 1573
Query 13642 AG---ATGTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATA 13698
| |||||| || || ||||| ||||| |||||||| | ||| || || | |||
Sbjct 1572 ACCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATC 1513
Query 13699 AGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13758
|| || || || ||||| | || ||||| | || ||||| || | ||| || || |
Sbjct 1512 AGCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAG 1453
Query 13759 GCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCA 13818
||||| || ||||| || |||||||| || ||||| ||||| | || || |||
Sbjct 1452 GCGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCA 1393
Query 13819 AACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAA 13878
|| || ||| ||| ||||| | ||||| |||| || || |||| | |
Sbjct 1392 AAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA 1333
Query 13879 TCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGT---ACTTGAAATGTAT 13935
|| ||||| || || || |||| | || | ||| || || | |||||
Sbjct 1332 GGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGT---ATGTAG 1276
Query 13936 GTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCA 13995
|| ||||| | | ||| |||||||||||||| | ||||| || || || || ||||||
Sbjct 1275 GTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCA 1216
Query 13996 TAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCA 14055
|||||||| | || || | |||||| || | || | ||| |||| ||||||
Sbjct 1215 TAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCA 1156
Query 14056 TTAACAATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCT 14115
|| ||||| |||||| || || ||||||||||| | | ||||| || |||
Sbjct 1155 TTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAA--ATGCCTC- 1099
Query 14116 TCATTGT---TGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACT 14172
||||| | | | ||||| ||| || | |||||| | | ||| ||||| || |||
Sbjct 1098 TCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACT 1039
Query 14173 GTCCAAAA 14180
||||||||
Sbjct 1038 GTCCAAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478403053704360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |