Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4853 360 3e-94 seq2021 349 5e-91 seq12187 242 5e-59 >seq4853 Length=2014 Score = 360 bits (398), Expect = 3e-94 Identities = 855/1287 (66%), Gaps = 9/1287 (1%) Strand=Plus/Plus Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432 ||| || ||||| || || || || || || || || | ||||| || || || || Sbjct 167 TGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAA 226 Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492 || ||||||||||| ||||| || || | | ||| || | ||||||| || || Sbjct 227 GGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTC 286 Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552 | |||||||| | ||| || || || ||||| |||||||| || |||||||| || || Sbjct 287 ATATGGATAACGCATGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGG 346 Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612 | || | | |||| ||| | || || || | || || ||||| || ||||| || Sbjct 347 ACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGAT 406 Query 71613 TTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672 ||| || | ||| | || | ||| | || || || ||||| ||||||| | | Sbjct 407 TTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGT 466 Query 71673 CCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 71729 | ||| | ||||||| || | |||| || || | ||||||||| || | || Sbjct 467 CTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTC 526 Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789 || | | | ||||| || |||||||||||| | ||| || |||||||| || |||| Sbjct 527 ATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAG 586 Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849 ||| |||||||||||||| ||||| ||||||||||| || ||| | ||||| ||||| Sbjct 587 ATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGT 646 Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909 ||| | |||| |||||||| || ||| | | | |||| || | | ||| Sbjct 647 TTCCACTTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGC 706 Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969 | ||| | || |||| ||| | | | ||||| || || |||||| | | | Sbjct 707 ACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATG 766 Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029 || ||| || || | | || ||||| | |||||| || ||||| | | || ||||| Sbjct 767 TAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTT 826 Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 72088 ||| || | || || ||||| ||||| ||| |||| ||||| | | || ||| || | Sbjct 827 CATGAACAAGTCGGGTATCCACAGAGC-ATAGAATAAATCTCGTGCACGATACTCTTCCT 885 Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148 | || ||||| || || | ||| | ||| | | ||||| || ||||| |||||||| | Sbjct 886 TGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAAT 945 Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208 | ||||| | | || || |||||| ||||||||||| | ||| | || ||||| Sbjct 946 AGATGGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTAT 1005 Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268 | | || | || ||| || | | |||||| || | ||||| || || | || Sbjct 1006 TGAACACACGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCG 1065 Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326 | || |||| || || | ||| ||| || || || || ||||| || ||||| Sbjct 1066 TGCCTTTGGCGCGTATGCAATGCACATT--CAGGCCAATGCCGCCTGCGGACTTGGAGAT 1123 Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386 | |||||| | | || | | | || ||||| || ||| | | ||| | || Sbjct 1124 CATGGCGCATTGCTCTACGGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAG 1183 Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446 || |||||| |||| ||| | || || || | ||| |||| || ||||| || Sbjct 1184 CAGGAAACAGGAGGACAGTTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGC 1243 Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506 ||| ||||| | || || |||| |||||| || || || || | || |||||| Sbjct 1244 GTGAGTAAAATAGCGCTCTGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTC 1303 Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566 ||||| || || || |||||||| | | ||| ||||| | || || || | Sbjct 1304 GCCGTGTATGCCCACAGCCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCC 1363 Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626 ||| |||||||| || ||||| ||| | || || || || || || || || ||| Sbjct 1364 ATTGATTTTCAATAAATAGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAA 1423 Query 72627 GTCTCGTTCGTAAATAATAACCGAATT 72653 ||| || || |||||||| | ||||| Sbjct 1424 GTCGCGATCATAAATAATGGCGGAATT 1450 Score = 89.7 bits (98), Expect = 7e-13 Identities = 115/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824 |||| |||||| ||||| ||||||| ||| || || || ||||| || || | ||| || Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775 Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884 ||| || | ||| ||||| || ||||| || |||| || |||| | |||||||||| Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835 Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923 | ||| | |||||| ||| | || | ||||| || Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874 >seq2021 Length=2943 Score = 349 bits (386), Expect = 5e-91 Identities = 950/1462 (65%), Gaps = 29/1462 (2%) Strand=Plus/Minus Query 70795 TCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTT 70854 |||| ||||| || || | | || || | ||||| || | ||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 70855 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCG 70914 || | || |||| ||||| ||||| || || ||||| ||| | || || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974 || | || || || | ||| ||||||||||| || || || || | || || |||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 71033 || || |||||| | ||| ||||||| || || || || || | | || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 71034 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCT 71091 | | | | |||| || |||||||||| || | ||||| |||||| || || Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 71092 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAAT 71151 |||| ||||| | |||||| ||| | | || | |||| |||| || || || ||| Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790 Query 71152 TCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTA 71211 || ||||||||||| | ||| || || |||||| ||||| || || | || |||||| Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730 Query 71212 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTA 71271 || |||| ||||| ||||| || || || ||||| ||||| | | | | ||| | Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670 Query 71272 AGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACA 71331 | |||||| ||||| || || || |||||||||| ||||| | ||| Sbjct 1669 ACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGTT 1610 Query 71332 ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT--------AGC--------GT---- 71371 || || || || ||| || Sbjct 1609 TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTTCA 1550 Query 71372 ---ATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCT 71428 ||| || ||||| || || || || || || || || | ||||| || || | Sbjct 1549 TAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTT 1490 Query 71429 CTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGC 71488 | || || ||||||||||| ||||| || || | | ||| || | ||||||| | Sbjct 1489 CCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCAC 1430 Query 71489 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548 | ||| |||||||| | ||| || || || ||||| |||||||| ||||||||||| | Sbjct 1429 TTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACCTA 1370 Query 71549 TAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 71608 | || | || | | |||| ||| | || || || | || || ||||| || |||| Sbjct 1369 TGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTA 1310 Query 71609 TAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 71668 | ||||| || | ||| | || | ||| | || || || ||||| ||||||| Sbjct 1309 TGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCAT 1250 Query 71669 ATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 71725 | || ||| | ||||||| || | |||| || || | ||||||||| || | Sbjct 1249 AAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAA 1190 Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785 |||| | | | ||||| || |||||||||||| | ||| || |||||||| || | Sbjct 1189 TTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGC 1130 Query 71786 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTAC 71845 ||| ||| |||||||||||||| ||||| ||||||||||| || ||| | ||||| | Sbjct 1129 CTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGC 1070 Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCT 71905 ||||||| | ||||| |||||||| || ||| | | | |||| || | | | Sbjct 1069 CAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGAT 1010 Query 71906 TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965 || | ||| | || |||| ||| | | | ||||| || || |||||| | | Sbjct 1009 TGGCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTT 950 Query 71966 TGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025 | || ||| || || | | || ||||| | |||||| || ||||| | | || | Sbjct 949 CATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACAC 890 Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 72085 ||||||| || | || || ||||| ||||| ||||| ||||| | | || ||| | Sbjct 889 GTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTT 830 Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 | || || ||||| || || | ||| | ||| | | ||||| || ||||| ||||| | Sbjct 829 CCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTA 770 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 | || ||||| | | || || |||||| ||||||||||| | ||| | || || Sbjct 769 AATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGT 710 Query 72206 TATTATAAACTCTCAACATTGG 72227 |||| | || | || ||| || Sbjct 709 TATTGAACACACGCAGCATAGG 688 >seq12187 Length=3570 Score = 242 bits (268), Expect = 5e-59 Identities = 474/696 (68%), Gaps = 11/696 (2%) Strand=Plus/Minus Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968 || ||||||||| ||| | || |||||||| || || || || || || || || Sbjct 1707 AACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCA 1648 Query 41969 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT 42028 |||| ||||| |||||||| || || || || ||| || || || Sbjct 1647 TCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAGTATGCGCTCA 1588 Query 42029 TCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCC 42088 ||| ||| | || |||||||| ||||||||||| || || || || |||| || Sbjct 1587 CGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCT 1528 Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 || || | ||| | || ||||| || || || || ||||| || ||||| || ||| Sbjct 1527 TCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTA 1468 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| || ||||| || || ||| ||||| || || || || || ||||| || Sbjct 1467 AGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCT 1408 Query 42209 ATAAGTCTCTCTCCATAACCGGCAC-TGTC-ATGT-ATCCACTTTTGAGCCCAATCGGCC 42265 |||| | ||| ||| || ||| | || ||| ||||| |||||||| ||| Sbjct 1407 ATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCC 1348 Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325 ||||| || ||| ||||| |||||| ||||| ||||| ||| | | || || | Sbjct 1347 TTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTG 1288 Query 42326 TCTTTAACATATGTA----TCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381 || || |||||| || ||||||| || |||||||| || || | ||||| || Sbjct 1287 TC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCAT 1232 Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441 ||| || || || || || ||||| | ||||| || | ||||||||| | || || Sbjct 1231 GGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACG 1172 Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 42501 || | |||||||| || || || || ||| ||| || ||||| ||||| ||||| Sbjct 1171 CTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGA 1112 Query 42502 TATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATC 42561 |||||||| | || | ||| ||||| | ||| ||||| ||||| || ||| ||| Sbjct 1111 TATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATC 1052 Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597 ||||| || || ||||||||||| ||||| ||||| Sbjct 1051 CACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670878722487240