Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 360 3e-94
seq2021 349 5e-91
seq12187 242 5e-59
>seq4853
Length=2014
Score = 360 bits (398), Expect = 3e-94
Identities = 855/1287 (66%), Gaps = 9/1287 (1%)
Strand=Plus/Plus
Query 71373 TGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAA 71432
||| || ||||| || || || || || || || || | ||||| || || || ||
Sbjct 167 TGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAA 226
Query 71433 TGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATC 71492
|| ||||||||||| ||||| || || | | ||| || | ||||||| || ||
Sbjct 227 GGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTC 286
Query 71493 AAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGG 71552
| |||||||| | ||| || || || ||||| |||||||| || |||||||| || ||
Sbjct 287 ATATGGATAACGCATGAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGG 346
Query 71553 TCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAAT 71612
| || | | |||| ||| | || || || | || || ||||| || ||||| ||
Sbjct 347 ACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGAT 406
Query 71613 TTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCT 71672
||| || | ||| | || | ||| | || || || ||||| ||||||| | |
Sbjct 407 TTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGT 466
Query 71673 CCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTC 71729
| ||| | ||||||| || | |||| || || | ||||||||| || | ||
Sbjct 467 CTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTC 526
Query 71730 ATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAA 71789
|| | | | ||||| || |||||||||||| | ||| || |||||||| || ||||
Sbjct 527 ATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAG 586
Query 71790 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTACCAGT 71849
||| |||||||||||||| ||||| ||||||||||| || ||| | ||||| |||||
Sbjct 587 ATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGT 646
Query 71850 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCTTGTA 71909
||| | |||| |||||||| || ||| | | | |||| || | | |||
Sbjct 647 TTCCACTTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGC 706
Query 71910 TCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTC 71969
| ||| | || |||| ||| | | | ||||| || || |||||| | | |
Sbjct 707 ACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATG 766
Query 71970 TAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTT 72029
|| ||| || || | | || ||||| | |||||| || ||||| | | || |||||
Sbjct 767 TAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTT 826
Query 72030 CATAAAGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGCTCCTCGT 72088
||| || | || || ||||| ||||| ||| |||| ||||| | | || ||| || |
Sbjct 827 CATGAACAAGTCGGGTATCCACAGAGC-ATAGAATAAATCTCGTGCACGATACTCTTCCT 885
Query 72089 TTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGT 72148
| || ||||| || || | ||| | ||| | | ||||| || ||||| |||||||| |
Sbjct 886 TGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAAT 945
Query 72149 ATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTAT 72208
| ||||| | | || || |||||| ||||||||||| | ||| | || |||||
Sbjct 946 AGATGGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTAT 1005
Query 72209 TATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGC 72268
| | || | || ||| || | | |||||| || | ||||| || || | ||
Sbjct 1006 TGAACACACGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCG 1065
Query 72269 TTCCACTGGCACGAAT--ATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGAT 72326
| || |||| || || | ||| ||| || || || || ||||| || |||||
Sbjct 1066 TGCCTTTGGCGCGTATGCAATGCACATT--CAGGCCAATGCCGCCTGCGGACTTGGAGAT 1123
Query 72327 TAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAG 72386
| |||||| | | || | | | || ||||| || ||| | | ||| | ||
Sbjct 1124 CATGGCGCATTGCTCTACGGACTTGAAAATACCCTCGATGGAGTCAGCAACCATAGTGAG 1183
Query 72387 TAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGC 72446
|| |||||| |||| ||| | || || || | ||| |||| || ||||| ||
Sbjct 1184 CAGGAAACAGGAGGACAGTTGTGGGCGTCTTGTGGCTGCAGCGAATAGCGTGGGAGAGGC 1243
Query 72447 GTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCA 72506
||| ||||| | || || |||| |||||| || || || || | || ||||||
Sbjct 1244 GTGAGTAAAATAGCGCTCTGATAGTAAATTGTAGGTTTCTATGGCCGCATCGATATCCTC 1303
Query 72507 TTGATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTT 72566
||||| || || || |||||||| | | ||| ||||| | || || || |
Sbjct 1304 GCCGTGTATGCCCACAGCCACACGCATCAGTAGATGTTGAGGACGCTCGACAATTTCCCC 1363
Query 72567 ATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 72626
||| |||||||| || ||||| ||| | || || || || || || || || |||
Sbjct 1364 ATTGATTTTCAATAAATAGGAACGTTCGAGTGTCTTGAATCCGAAGTAATTATAGCCAAA 1423
Query 72627 GTCTCGTTCGTAAATAATAACCGAATT 72653
||| || || |||||||| | |||||
Sbjct 1424 GTCGCGATCATAAATAATGGCGGAATT 1450
Score = 89.7 bits (98), Expect = 7e-13
Identities = 115/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 72765 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 72824
|||| |||||| ||||| ||||||| ||| || || || ||||| || || | ||| ||
Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775
Query 72825 ATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAATTC 72884
||| || | ||| ||||| || ||||| || |||| || |||| | ||||||||||
Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835
Query 72885 TACCGTTGTTACTCCATTATATATTCCTTGGATAACCTT 72923
| ||| | |||||| ||| | || | ||||| ||
Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874
>seq2021
Length=2943
Score = 349 bits (386), Expect = 5e-91
Identities = 950/1462 (65%), Gaps = 29/1462 (2%)
Strand=Plus/Minus
Query 70795 TCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACATGCCTGTT 70854
|||| ||||| || || | | || || | ||||| || | ||| ||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 70855 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCG 70914
|| | || |||| ||||| ||||| || || ||||| ||| | || ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 70915 GCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 70974
|| | || || || | ||| ||||||||||| || || || || | || || ||||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970
Query 70975 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 71033
|| || |||||| | ||| ||||||| || || || || || | | || |
Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910
Query 71034 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCT 71091
| | | | |||| || |||||||||| || | ||||| |||||| || ||
Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850
Query 71092 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAAT 71151
|||| ||||| | |||||| ||| | | || | |||| |||| || || || |||
Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790
Query 71152 TCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTA 71211
|| ||||||||||| | ||| || || |||||| ||||| || || | || ||||||
Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730
Query 71212 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTA 71271
|| |||| ||||| ||||| || || || ||||| ||||| | | | | ||| |
Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670
Query 71272 AGACCATGTGATCGGATTTTATCTTTTAGAGATTCCCAATTCCAAAGATCCGATGGTACA 71331
| |||||| ||||| || || || |||||||||| ||||| | |||
Sbjct 1669 ACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGTT 1610
Query 71332 ACNNNNNNNNNNNNNNNNNNNNNNATGCCGTTACT--------AGC--------GT---- 71371
|| || || || ||| ||
Sbjct 1609 TTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTTCA 1550
Query 71372 ---ATGATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCT 71428
||| || ||||| || || || || || || || || | ||||| || || |
Sbjct 1549 TAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTT 1490
Query 71429 CTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGC 71488
| || || ||||||||||| ||||| || || | | ||| || | ||||||| |
Sbjct 1489 CCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCAC 1430
Query 71489 TATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGA 71548
| ||| |||||||| | ||| || || || ||||| |||||||| ||||||||||| |
Sbjct 1429 TTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACCTA 1370
Query 71549 TAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTA 71608
| || | || | | |||| ||| | || || || | || || ||||| || ||||
Sbjct 1369 TGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTA 1310
Query 71609 TAATTTTATTGAGATTTCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAA 71668
| ||||| || | ||| | || | ||| | || || || ||||| |||||||
Sbjct 1309 TGATTTTGTTCAAATTACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCAT 1250
Query 71669 ATCTCCCATCTA---TTACAAACACGTTCAAGGCAACAGATGCCAGATTACAAACGGCTA 71725
| || ||| | ||||||| || | |||| || || | ||||||||| || |
Sbjct 1249 AAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAA 1190
Query 71726 CCTCATTAGCATCGGCATATTGTATAATTTCAGTGCAAAGATTACTACACTTGATGGTTC 71785
|||| | | | ||||| || |||||||||||| | ||| || |||||||| || |
Sbjct 1189 TTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGC 1130
Query 71786 CTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATAAACGGAGTAC 71845
||| ||| |||||||||||||| ||||| ||||||||||| || ||| | ||||| |
Sbjct 1129 CTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGC 1070
Query 71846 CAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATATTCT 71905
||||||| | ||||| |||||||| || ||| | | | |||| || | | |
Sbjct 1069 CAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGAT 1010
Query 71906 TGTATCTCTTTTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCAT 71965
|| | ||| | || |||| ||| | | | ||||| || || |||||| | |
Sbjct 1009 TGGCACGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTT 950
Query 71966 TGTCTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTC 72025
| || ||| || || | | || ||||| | |||||| || ||||| | | || |
Sbjct 949 CATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACAC 890
Query 72026 GTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCT 72085
||||||| || | || || ||||| ||||| ||||| ||||| | | || ||| |
Sbjct 889 GTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTT 830
Query 72086 CGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145
| || || ||||| || || | ||| | ||| | | ||||| || ||||| ||||| |
Sbjct 829 CCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTA 770
Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205
| || ||||| | | || || |||||| ||||||||||| | ||| | || ||
Sbjct 769 AATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGT 710
Query 72206 TATTATAAACTCTCAACATTGG 72227
|||| | || | || ||| ||
Sbjct 709 TATTGAACACACGCAGCATAGG 688
>seq12187
Length=3570
Score = 242 bits (268), Expect = 5e-59
Identities = 474/696 (68%), Gaps = 11/696 (2%)
Strand=Plus/Minus
Query 41909 AATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTGGAAGAGCC 41968
|| ||||||||| ||| | || |||||||| || || || || || || || ||
Sbjct 1707 AACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCA 1648
Query 41969 ACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTTACTGTTTCT 42028
|||| ||||| |||||||| || || || || ||| || || ||
Sbjct 1647 TCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAGTATGCGCTCA 1588
Query 42029 TCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCC 42088
||| ||| | || |||||||| ||||||||||| || || || || |||| ||
Sbjct 1587 CGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCT 1528
Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148
|| || | ||| | || ||||| || || || || ||||| || ||||| || |||
Sbjct 1527 TCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTA 1468
Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208
||||| || ||||| || || ||| ||||| || || || || || ||||| ||
Sbjct 1467 AGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGCTGCAAATGCT 1408
Query 42209 ATAAGTCTCTCTCCATAACCGGCAC-TGTC-ATGT-ATCCACTTTTGAGCCCAATCGGCC 42265
|||| | ||| ||| || ||| | || ||| ||||| |||||||| |||
Sbjct 1407 ATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCC 1348
Query 42266 TTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTA 42325
||||| || ||| ||||| |||||| ||||| ||||| ||| | | || || |
Sbjct 1347 TTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTG 1288
Query 42326 TCTTTAACATATGTA----TCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAAT 42381
|| || |||||| || ||||||| || |||||||| || || | ||||| ||
Sbjct 1287 TC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCAT 1232
Query 42382 GGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCG 42441
||| || || || || || ||||| | ||||| || | ||||||||| | || ||
Sbjct 1231 GGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACG 1172
Query 42442 TTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTT 42501
|| | |||||||| || || || || ||| ||| || ||||| ||||| |||||
Sbjct 1171 CTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGA 1112
Query 42502 TATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTGATATCTTTAGATATATC 42561
|||||||| | || | ||| ||||| | ||| ||||| ||||| || ||| |||
Sbjct 1111 TATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATC 1052
Query 42562 TACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTT 42597
||||| || || ||||||||||| ||||| |||||
Sbjct 1051 CACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 670878722487240
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