Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq4853 134 1e-26 seq2021 134 1e-26 >seq4853 Length=2014 Score = 134 bits (148), Expect = 1e-26 Identities = 246/360 (68%), Gaps = 3/360 (1%) Strand=Plus/Plus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||||||| || || ||||| | ||||| || ||||||||||| |||||||| || Sbjct 309 AATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGC 368 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACA 156991 || || | |||||| ||||| || || ||||| |||||| || |||| Sbjct 369 TTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACA 428 Query 156992 TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTA---TTGATATATTTA 157048 ||| | || | | | || ||||||| |||| | | |||| | | || Sbjct 429 ATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATA 488 Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108 |||| ||||| || |||| |||||| || ||| |||| || || || |||||| ||| Sbjct 489 TTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACA 548 Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168 ||||| | || ||||||||||| || || || ||| |||||| || ||||| Sbjct 549 ATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGA 608 Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 || ||||| ||||| || | ||| || || ||||| ||||| ||||| ||||| ||| Sbjct 609 TTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATG 668 >seq2021 Length=2943 Score = 134 bits (148), Expect = 1e-26 Identities = 246/360 (68%), Gaps = 3/360 (1%) Strand=Plus/Minus Query 156872 AATGCATCGGCCAAACCTTGAATGCCAATGCCGATGGGACGATGGCGCATATTAGAtttt 156931 |||||||| || || ||||| | |||||| || ||||||||||| |||||||| || Sbjct 1403 AATGCATCTGCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGC 1344 Query 156932 tttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATTCAAACTATCCACTACA 156991 || || | |||||| ||||| || || ||||| |||||| || |||| Sbjct 1343 TTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACA 1284 Query 156992 TGTTTGACCACAGTGTGCAATAGTTGAAAATCAAAAGTATCATTA---TTGATATATTTA 157048 ||| | || | | | || ||||||| |||| | | |||| | | || Sbjct 1283 ATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATA 1224 Query 157049 TTGACGGCAATCGACGCTAGATTACATACGGCAGTTTCGTCGGGCGCGCAATATTGTACT 157108 |||| ||||| || |||| |||||| || ||| |||| || || || |||||| ||| Sbjct 1223 TTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACA 1164 Query 157109 ATTTCCGCACACAAATTGCTGCATTTTATCAATCCGCAATTACTTTGATTGCTTTTGCGG 157168 ||||| | || ||||||||||| || || || ||| |||||| || ||||| Sbjct 1163 ATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGA 1104 Query 157169 TTGCAAGCGTCCTTGTATAACATGTACGGTGTGCCGGTTTCGGCTTGAATTTCTATGATG 157228 || ||||| ||||| || | ||| || || ||||| ||||| | ||| ||||| ||| Sbjct 1103 TTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATG 1044 Score = 86.0 bits (94), Expect = 6e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 156143 ACGGTAAATTGCTGCGAATTGGCCGCCGGAAGTGTGCGAAAATAGTACATGCCGGTTTTG 156202 || |||||||| | |||||| || || ||||| ||||| ||||| ||||| || Sbjct 2146 ACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTCTTC 2087 Query 156203 AGGCCGCGCTTCCAACCGTACATGTGCACCGACGCCATTTTAGGCAAAGTAGGGTTTGCC 156262 | ||| ||||||||||| | || | || | || |||| || | || | ||| Sbjct 2086 AAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCAGCC 2027 Query 156263 ATGTACACGTTGAACGATTGACTTTGATCGATAAATGCTCCCCTGTCTGCTGCCATTTCA 156322 | | | ||| ||||||||||||||||| ||||| || || | || |||||||||| | Sbjct 2026 ACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATTTTA 1967 Query 156323 AT 156324 || Sbjct 1966 AT 1965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506817621373680