Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005083.2
Length=244834
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 91.5 2e-13
>seq2789
Length=15484
Score = 91.5 bits (100), Expect = 2e-13
Identities = 225/335 (67%), Gaps = 10/335 (3%)
Strand=Plus/Minus
Query 8906 ACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGT 8965
|| || || || || ||| |||| ||||||||||| ||| || |||||| | || ||
Sbjct 2614 ACAGGATATGGTTTTAGTTTATATAGCACGCCAAGTGAAAATCTTTGTGATAGATTTTGC 2555
Query 8966 CGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACG 9025
| | ||| || | ||| || || |||| ||| | | ||||| | ||||| ||
Sbjct 2554 CAATTAGATAAAAAAGAATTTGGCATTATTAAAGGTGTTACAGACAAGAATTATTATAC- 2496
Query 9026 AACTCGTTT-CACTTAGATGTGTTCAAGAA--AGTGAATCCGTTCGAGAAGATTGATTTC 9082
|| | |||| ||||| || |||| || || ||| ||||| | || || ||| |||
Sbjct 2495 AAATAGTTTCCACTTGGA--TGTTAAAAAATCAGTAAATCCATATGAAAAAATTCTTTTT 2438
Query 9083 GAAGCAGCATACCC--AATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGA 9140
||| | |||| || |||| ||| |||||||| || || || || | ||||| || |
Sbjct 2437 GAAAAATCATATCCAGAATT--TGCAAATGGTGGCTTTATTTGTTACGGTGAATATCCTA 2380
Query 9141 ACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAGAAAGTTG 9200
| ||| || | || || |||| |||| || ||||||| ||||| ||
Sbjct 2379 ATATGAGAAAAAATATTAAAGCATTAGAAGATGTTTGGGATTTTAGTTATAAATTTGTGC 2320
Query 9201 CGTACTTCGGCACAAACACGCCGATTGACCAGTGT 9235
| || | || ||||| || || |||||| |||||
Sbjct 2319 CTTATTATGGAACAAATACTCCAATTGACGAGTGT 2285
Score = 86.0 bits (94), Expect = 1e-11
Identities = 173/253 (68%), Gaps = 3/253 (1%)
Strand=Plus/Minus
Query 7626 ATATTAAA-GAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTA 7684
||| |||| |||||||| |||||||| || || || || || | || ||| ||
Sbjct 3889 ATACTAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTA 3830
Query 7685 GCTGGTACAGTGTCGAAACAATATGCACTGGAAGAATAT-CTACCGAAGCACATTGCAGA 7743
||||||| | | || ||||| ||||| || |||| || || || || | | ||
Sbjct 3829 GCTGGTATAATTTCTAAACATTATGCTAAA-AATCATATACTTCCCAAAGACGTAGTTGA 3771
Query 7744 CGCTCATATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCA 7803
||||||| | || || ||||||| ||| || | |||||| ||| | || ||
Sbjct 3770 CGCTCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAAT 3711
Query 7804 ATTCAACTGTATGCTTATCGACATCAAGGGGATGTTCGAAGGTGGGTTCAAAATGGGTAA 7863
|| || |||||| | | || | || || ||| | |||||||| || ||||| || ||
Sbjct 3710 GTTTAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAA 3651
Query 7864 CGCTGAAATTGAA 7876
||||||||||||
Sbjct 3650 TGCTGAAATTGAA 3638
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 783036775643760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |