Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005083.2 Length=244834 Score E Sequences producing significant alignments: (Bits) Value seq2789 91.5 2e-13 >seq2789 Length=15484 Score = 91.5 bits (100), Expect = 2e-13 Identities = 225/335 (67%), Gaps = 10/335 (3%) Strand=Plus/Minus Query 8906 ACTGGCTACGGATTCAGTCTATACAGCACGCCAAGCGAATCGCTATGTGATCGTTTCTGT 8965 || || || || || ||| |||| ||||||||||| ||| || |||||| | || || Sbjct 2614 ACAGGATATGGTTTTAGTTTATATAGCACGCCAAGTGAAAATCTTTGTGATAGATTTTGC 2555 Query 8966 CGTCTCGATCAAGAGAAATACGGTATCATTACGGGTATCAACGACAAAGACTATTACACG 9025 | | ||| || | ||| || || |||| ||| | | ||||| | ||||| || Sbjct 2554 CAATTAGATAAAAAAGAATTTGGCATTATTAAAGGTGTTACAGACAAGAATTATTATAC- 2496 Query 9026 AACTCGTTT-CACTTAGATGTGTTCAAGAA--AGTGAATCCGTTCGAGAAGATTGATTTC 9082 || | |||| ||||| || |||| || || ||| ||||| | || || ||| ||| Sbjct 2495 AAATAGTTTCCACTTGGA--TGTTAAAAAATCAGTAAATCCATATGAAAAAATTCTTTTT 2438 Query 9083 GAAGCAGCATACCC--AATTCATGCGAATGGTGGTTTCATCTGCTATGCTGAATTCCCGA 9140 ||| | |||| || |||| ||| |||||||| || || || || | ||||| || | Sbjct 2437 GAAAAATCATATCCAGAATT--TGCAAATGGTGGCTTTATTTGTTACGGTGAATATCCTA 2380 Query 9141 ACATGCGAGACAACATCAAAGGTCTAGAGCGCGTATGGGATTACGCATATAAGAAAGTTG 9200 | ||| || | || || |||| |||| || ||||||| ||||| || Sbjct 2379 ATATGAGAAAAAATATTAAAGCATTAGAAGATGTTTGGGATTTTAGTTATAAATTTGTGC 2320 Query 9201 CGTACTTCGGCACAAACACGCCGATTGACCAGTGT 9235 | || | || ||||| || || |||||| ||||| Sbjct 2319 CTTATTATGGAACAAATACTCCAATTGACGAGTGT 2285 Score = 86.0 bits (94), Expect = 1e-11 Identities = 173/253 (68%), Gaps = 3/253 (1%) Strand=Plus/Minus Query 7626 ATATTAAA-GAAAATGCCAATAAAGACTCGAAAGTGATCCCTACAATGCGTGACTTGGTA 7684 ||| |||| |||||||| |||||||| || || || || || | || ||| || Sbjct 3889 ATACTAAATGAAAATGCTAATAAAGATAGCAATGTTATTCCAACTCAAAGAGATTTGTTA 3830 Query 7685 GCTGGTACAGTGTCGAAACAATATGCACTGGAAGAATAT-CTACCGAAGCACATTGCAGA 7743 ||||||| | | || ||||| ||||| || |||| || || || || | | || Sbjct 3829 GCTGGTATAATTTCTAAACATTATGCTAAA-AATCATATACTTCCCAAAGACGTAGTTGA 3771 Query 7744 CGCTCATATCGACGGCGATATTCATTTTCACGACCTTGATTATAGCCCACTATTCCCGCA 7803 ||||||| | || || ||||||| ||| || | |||||| ||| | || || Sbjct 3770 CGCTCATGAAAAAGGTGAAATTCATTATCATGATTTAGATTATTCACCATTTTTTCCAAT 3711 Query 7804 ATTCAACTGTATGCTTATCGACATCAAGGGGATGTTCGAAGGTGGGTTCAAAATGGGTAA 7863 || || |||||| | | || | || || ||| | |||||||| || ||||| || || Sbjct 3710 GTTTAATTGTATGTTAGTTGATTTAAAAGGAATGCTTGAAGGTGGCTTTAAAATAGGAAA 3651 Query 7864 CGCTGAAATTGAA 7876 |||||||||||| Sbjct 3650 TGCTGAAATTGAA 3638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 783036775643760