Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005135.1 Length=173591 Score E Sequences producing significant alignments: (Bits) Value seq2698 95.1 1e-14 >seq2698 Length=11445 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/182 (72%), Gaps = 6/182 (3%) Strand=Plus/Minus Query 65946 GATTGTGTGAAAGTTCGCGTGATTACGTCCCGTTGTTGCTCAGGAGTTAATGCATTAAAG 66005 |||| ||||||||||| || || || || ||||||| ||||| ||||| | ||||| Sbjct 5499 GATTTTGTGAAAGTTCTGGTAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAAT 5440 Query 66006 CGTACGGCATAACCGGAAACACGGATGGTTAGTTGGGGATATTTTTCTGGATTAACGATT 66065 | || ||||| || ||||| | || |||| || || |||||||| |||| | | | Sbjct 5439 CTAACAGCATATCCTGAAACCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACT 5380 Query 66066 GCATCTTCCAGGGT---ATTTCGGTCAAGAACATTTACGTTGAGATGCTGACCACCTTCA 66122 ||||| || || ||||| |||||| ||||| || | ||| || ||||||||| Sbjct 5379 GCATCAAGAAGTGTTTCTTTTCG---AAGAACGTTTACATTTAAATGTTGTCCACCTTCA 5323 Query 66123 AC 66124 || Sbjct 5322 AC 5321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555147656600040