Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq12187 190 2e-43 >seq12187 Length=3570 Score = 190 bits (210), Expect = 2e-43 Identities = 491/734 (67%), Gaps = 17/734 (2%) Strand=Plus/Minus Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020 |||||| ||||| | | || | ||||| ||||||||||| || | ||| | | Sbjct 1740 ACACCC-AATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTT 1682 Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080 || ||||| || || | || ||||||| || || || | ||| | || |||||| | Sbjct 1681 GCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTT 1622 Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATG 13137 || || || | || || ||| || || | | | ||| || || | ||| Sbjct 1621 TACAGCCTCACATATGATTTCAAGTATG-CGCTCACGACT--AGGTTTCTGCACCAAATG 1565 Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 || ||||||| ||| ||||| ||||| ||||| ||||| || | || ||||| || Sbjct 1564 TTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATT 1505 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC-AAACG 13256 || ||||| || || ||||| || || ||||| |||| ||| || |||| || |||| Sbjct 1504 GGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACT 1445 Query 13257 AACCC-GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 | | ||| |||||| || ||||| |||||||| ||||| | | |||||| | | Sbjct 1444 GCCACTGAAGAAAATA--CCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTG 1387 Query 13316 --CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTC 13372 | |||| | ||||| ||||||| | || || | ||||| |||| | Sbjct 1386 GCCGATTTCGATGAG--ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGG-C 1330 Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432 | |||| || |||||||||| | ||| || || |||| || || || || Sbjct 1329 AGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCA 1270 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 ||||| | ||| |||||||| || || | ||||||||| || |||||||||||||||||| Sbjct 1269 ATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAA 1210 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || | ||||| | || || ||||| | || | ||| | || ||||| || || Sbjct 1209 CAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACA 1150 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCT 13612 || || ||| || || ||||| || | | ||| ||||| | | || || ||| Sbjct 1149 ATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCT 1090 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 | ||| ||| ||| || | ||| || ||||||| || ||||| || |||||||| Sbjct 1089 GTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAAT 1030 Query 13673 GAAGCAACAGCCTT 13686 ||||| | ||||| Sbjct 1029 GAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430819312084698