Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 190 2e-43
>seq12187
Length=3570
Score = 190 bits (210), Expect = 2e-43
Identities = 491/734 (67%), Gaps = 17/734 (2%)
Strand=Plus/Minus
Query 12961 ACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATC 13020
|||||| ||||| | | || | ||||| ||||||||||| || | ||| | |
Sbjct 1740 ACACCC-AATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTT 1682
Query 13021 ACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATC 13080
|| ||||| || || | || ||||||| || || || | ||| | || |||||| |
Sbjct 1681 GCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTT 1622
Query 13081 AACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT-TGAT--AGATG 13137
|| || || | || || ||| || || | | | ||| || || | |||
Sbjct 1621 TACAGCCTCACATATGATTTCAAGTATG-CGCTCACGACT--AGGTTTCTGCACCAAATG 1565
Query 13138 CTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197
|| ||||||| ||| ||||| ||||| ||||| ||||| || | || ||||| ||
Sbjct 1564 TTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATT 1505
Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGC-AAACG 13256
|| ||||| || || ||||| || || ||||| |||| ||| || |||| || ||||
Sbjct 1504 GGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACT 1445
Query 13257 AACCC-GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315
| | ||| |||||| || ||||| |||||||| ||||| | | |||||| | |
Sbjct 1444 GCCACTGAAGAAAATA--CCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTG 1387
Query 13316 --CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAAC-GCAGTTC 13372
| |||| | ||||| ||||||| | || || | ||||| |||| |
Sbjct 1386 GCCGATTTCGATGAG--ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGG-C 1330
Query 13373 ATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCT 13432
| |||| || |||||||||| | ||| || || |||| || || || ||
Sbjct 1329 AGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCA 1270
Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492
||||| | ||| |||||||| || || | ||||||||| || ||||||||||||||||||
Sbjct 1269 ATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAA 1210
Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552
|| | ||||| | || || ||||| | || | ||| | || ||||| || ||
Sbjct 1209 CAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACA 1150
Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCT 13612
|| || ||| || || ||||| || | | ||| ||||| | | || || |||
Sbjct 1149 ATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCT 1090
Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672
| ||| ||| ||| || | ||| || ||||||| || ||||| || ||||||||
Sbjct 1089 GTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAAT 1030
Query 13673 GAAGCAACAGCCTT 13686
||||| | |||||
Sbjct 1029 GAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430819312084698
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |