Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005260.1 Length=233234 Score E Sequences producing significant alignments: (Bits) Value seq2789 183 5e-41 >seq2789 Length=15484 Score = 183 bits (202), Expect = 5e-41 Identities = 1161/1835 (63%), Gaps = 63/1835 (3%) Strand=Plus/Plus Query 36989 TTTATTAAAGATGTTTTACTCGTTTTTGGACTTCATCCTGCTTGCCGCGATTAAATGCGC 37048 ||| ||||| || || |||| |||| ||||| || || || || |||||| | | Sbjct 2094 TTTTTTAAA--TGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCC 2151 Query 37049 GAGAACCAGGCGCACCGAGATAACCGCATACGCGACGAATAACGTTCATTTTGGTATCGT 37108 ||| |||| ||| | ||| || ||||| | | || || | ||| | | | Sbjct 2152 TTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCAT 2211 Query 37109 CATGATTACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAA-TTCACCGTGA 37167 ||||||||||||| ||||||| | || || || ||| | || ||| || | | Sbjct 2212 CATGATTACCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTA 2270 Query 37168 TAGCCACATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAGA 37227 || ||||||||| | || | |||| |||||||||||||| ||||| || | Sbjct 2271 TATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTA 2330 Query 37228 TAAGCATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCT 37287 ||| | |||||||||| ||||| || ||||| | ||| ||| ||||||| |||||||| Sbjct 2331 TAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCA 2390 Query 37288 CCGTATGAAATAAATCCACC---TG--AACTCAGAGGAATAAATTGCTTTTCAAAATCAA 37342 ||||| ||||||| ||||| || || || | | || ||||||||| || Sbjct 2391 CCGTAACAAATAAAGCCACCATTTGCAAATTCTG-----GATATGATTTTTCAAAAAGAA 2445 Query 37343 TCTTGTCATAAGGATT---GGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAAT 37399 | || ||||| ||||| | || | | || || | |||||| || ||||| |||| Sbjct 2446 TTTTTTCATATGGATTTACTGATTTTTTA---ACATCCAAGTGGAAACTATTTGTATAAT 2502 Query 37400 AA-TCTT-TATCGAACA-CTTTATGAGTCGGATAAAGTTCGCTATCAATTTTAGCGAAA- 37455 || |||| | | |||| ||||| | | | | || |||| | || || ||| Sbjct 2503 AATTCTTGTCTGTAACACCTTTAATAATGCCAAATTCTTTTTTATCTA-ATTGGCAAAAT 2561 Query 37456 CGATAGCACAGGCTTTCAGATGGAGTACCGTACAGGCTGAAAGCCAAACCAGTTTCAGCT 37515 | || || || ||||| ||| || | || | || ||| | | || |||||| | Sbjct 2562 CTATCACAAAGATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTT 2621 Query 37516 TTCCAAGAATCGGTAAT--CTCTTTCATGTGTTTAAGAACAGACAGAGCGAACACT-TGT 37572 ||||| ||| || | |||| | | | ||||| || | | | | | || | | | | Sbjct 2622 TTCCAGCTATC--TACTGCCTCTCTTAATTTTTTAACAATAAATA-ATCCAAAATTCTTT 2678 Query 37573 TTGGTTTGATTCTCCATGATGTGTTC---ATCGATACCATACATCATGATTTCACTCAGT 37629 || || ||| || | || ||||| || || || |||| || || ||| | Sbjct 2679 TTATCTTCATTGTCAAACATATGTTCTGATTCACTATCAAACAT--TGCATTAACT-GCT 2735 Query 37630 TCATGCAGGCCGATATAGCCGATACTGACA--GAAGCGCGTCCATTTTCAAATGCTTTCA 37687 |||| | || |||||||| || ||| | || || | |||||||| ||| || | Sbjct 2736 TCATTTATTCCTATATAGCC--TAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAA 2793 Query 37688 TGATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAG 37747 | ||||| || |||||||| || | || ||||| || ||||| || | || || | Sbjct 2794 TAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGG 2853 Query 37748 CCACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTA 37807 | || | || || || || || | |||| | | ||||| | || |||| | | Sbjct 2854 CAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAA 2913 Query 37808 CTTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCAT--ATGATTGCC---GTTTGCGTC 37862 | || || || || | | || | | ||| || ||| || Sbjct 2914 --TATTTAATCTTTTTTCTAATATAAAATTAAATTTTTCAAAATTACCACATCCTGCTTC 2971 Query 37863 GAGTGCGATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAAC 37922 | ||| || | || | ||| | | |||| || |||| |||||| | || ||||||| Sbjct 2972 AATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAAT 3031 Query 37923 TTCATTGCCATTTTCGTCTTCCCAACGATGCAAGAAACTGCGGCATCCCATAGGGAACTT 37982 ||| |||||||| ||||| || | | ||| || | ||| ||||| || ||| Sbjct 3032 ACTATTACCATTTTCATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTT 3091 Query 37983 AAAGCTGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTT 38042 |||| |||||||| |||||||| |||||| | | |||||| |||||||| || | Sbjct 3092 AAAGGAACCAGTTGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTG 3151 Query 38043 AGAAGCGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGT-TGGCTTCAAGT 38101 | | || || || |||||||| || ||| |||| || || | | ||| | | Sbjct 3152 TGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCTATTAATTCTATT 3211 Query 38102 TGTGTCCGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGC 38161 ||| || ||||| | ||||| || ||||| || || || | || | | ||| | Sbjct 3212 TGT-CCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTC 3270 Query 38162 CAAGTCCAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTT 38221 | | ||| | || | | || || | || |||| || | ||| || ||| Sbjct 3271 CTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAA----TTAATCTTTCCTCTTTT 3326 Query 38222 ----CACCCAGACCAAAGCCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGA 38277 || || ||||| || || ||| || || ||||| || || |||| || | | Sbjct 3327 GTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAA 3386 Query 38278 GTGTTCACCTCGTATTCGAGTCCCTGCATTGCATCATACACA-GCTTTGTGAGTCTTTGC 38336 || || | || ||||| | ||| || | |||||| | ||| |||| | | | ||| | Sbjct 3387 GTATTAATTTCATATTCTAATCCTTGAAAAGCATCA-AAACATTCTTTTTCAATTTTTTC 3445 Query 38337 AATAGCGTATTCTTTCGCATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTC 38396 | || | |||| | | || || || || | | | ||| | | |||| Sbjct 3446 ATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTAT 3505 Query 38397 ATGAGTCATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCC 38456 | || || ||||| || || | | || ||| ||||| || | || || Sbjct 3506 TTCAGAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACC 3565 Query 38457 GTAAATGTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAAT 38516 ||| | |||||||| |||||||| || || ||||| || || | || || ||| Sbjct 3566 ATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAAT 3625 Query 38517 GCTTTTCGGAGTTTCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTT 38576 |||||||| || | |||||||| || || || | || | ||| ||||| Sbjct 3626 TGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTT 3685 Query 38577 GACATCTATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAA 38636 | ||| | ||||| || ||||||||||| || ||||| ||||| || | |||||| | Sbjct 3686 TAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATA 3745 Query 38637 GTGCAGCCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCTTTGC 38693 || | |||||||| || || | | || || ||||| || || || || Sbjct 3746 ATGAATTTCACCTTTTTCATGAGCGTCAACTACGTCTTTGGGAAGTATATGATTTTTAGC 3805 Query 38694 AAAGTGCTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTC 38753 | | || ||| || |||||||| | || ||| | |||||| || || || || || Sbjct 3806 ATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATC 3865 Query 38754 TTTGTTAGCATTCTCATTCATGATGCCTTCATCTT 38788 ||| |||||||| ||||| | ||| || ||||| Sbjct 3866 TTTATTAGCATTTTCATTTAGTATGGATTTATCTT 3900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745931182379760