Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005260.1
Length=233234
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 183 5e-41
>seq2789
Length=15484
Score = 183 bits (202), Expect = 5e-41
Identities = 1161/1835 (63%), Gaps = 63/1835 (3%)
Strand=Plus/Plus
Query 36989 TTTATTAAAGATGTTTTACTCGTTTTTGGACTTCATCCTGCTTGCCGCGATTAAATGCGC 37048
||| ||||| || || |||| |||| ||||| || || || || |||||| | |
Sbjct 2094 TTTTTTAAA--TGCTTAACTCTACTTTGAACTTCTTCTTGTTTTCCTTTATTAAACGGCC 2151
Query 37049 GAGAACCAGGCGCACCGAGATAACCGCATACGCGACGAATAACGTTCATTTTGGTATCGT 37108
||| |||| ||| | ||| || ||||| | | || || | ||| | | |
Sbjct 2152 TTGAATCAGGGCTACCTAAATATCCACATACTCTTCTTATCACAGATACTTTTCTTGCAT 2211
Query 37109 CATGATTACCACATTTAGGACATTCGTACCCTTTGGAAGTAGCAGTGAA-TTCACCGTGA 37167
||||||||||||| ||||||| | || || || ||| | || ||| || | |
Sbjct 2212 CATGATTACCACAACTAGGACAAGAAAAACCCTTACTTGT-GCAATCAAATTCGCCTTTA 2270
Query 37168 TAGCCACATTCAAAGCAAACATCAACAGGAGTATTTGTTCCGTAATACGGTGTGTTCAGA 37227
|| ||||||||| | || | |||| |||||||||||||| ||||| || |
Sbjct 2271 TATCCACATTCATAACACTCGTCAATTGGAGTATTTGTTCCATAATAAGGCACAAATTTA 2330
Query 37228 TAAGCATAATCCCAAACGTCTTCCAACGCTTTCAGATTATTTTTCATATTCGGATATTCT 37287
||| | |||||||||| ||||| || ||||| | ||| ||| ||||||| ||||||||
Sbjct 2331 TAACTAAAATCCCAAACATCTTCTAATGCTTTAATATTTTTTCTCATATTAGGATATTCA 2390
Query 37288 CCGTATGAAATAAATCCACC---TG--AACTCAGAGGAATAAATTGCTTTTCAAAATCAA 37342
||||| ||||||| ||||| || || || | | || ||||||||| ||
Sbjct 2391 CCGTAACAAATAAAGCCACCATTTGCAAATTCTG-----GATATGATTTTTCAAAAAGAA 2445
Query 37343 TCTTGTCATAAGGATT---GGTATTATGACGGACGTCGAGGTGGAAGCTGTTTGTGTAAT 37399
| || ||||| ||||| | || | | || || | |||||| || ||||| ||||
Sbjct 2446 TTTTTTCATATGGATTTACTGATTTTTTA---ACATCCAAGTGGAAACTATTTGTATAAT 2502
Query 37400 AA-TCTT-TATCGAACA-CTTTATGAGTCGGATAAAGTTCGCTATCAATTTTAGCGAAA- 37455
|| |||| | | |||| ||||| | | | | || |||| | || || |||
Sbjct 2503 AATTCTTGTCTGTAACACCTTTAATAATGCCAAATTCTTTTTTATCTA-ATTGGCAAAAT 2561
Query 37456 CGATAGCACAGGCTTTCAGATGGAGTACCGTACAGGCTGAAAGCCAAACCAGTTTCAGCT 37515
| || || || ||||| ||| || | || | || ||| | | || |||||| |
Sbjct 2562 CTATCACAAAGATTTTCACTTGGCGTGCTATATAAACTAAAACCATATCCTGTTTCATTT 2621
Query 37516 TTCCAAGAATCGGTAAT--CTCTTTCATGTGTTTAAGAACAGACAGAGCGAACACT-TGT 37572
||||| ||| || | |||| | | | ||||| || | | | | | || | | | |
Sbjct 2622 TTCCAGCTATC--TACTGCCTCTCTTAATTTTTTAACAATAAATA-ATCCAAAATTCTTT 2678
Query 37573 TTGGTTTGATTCTCCATGATGTGTTC---ATCGATACCATACATCATGATTTCACTCAGT 37629
|| || ||| || | || ||||| || || || |||| || || ||| |
Sbjct 2679 TTATCTTCATTGTCAAACATATGTTCTGATTCACTATCAAACAT--TGCATTAACT-GCT 2735
Query 37630 TCATGCAGGCCGATATAGCCGATACTGACA--GAAGCGCGTCCATTTTCAAATGCTTTCA 37687
|||| | || |||||||| || ||| | || || | |||||||| ||| || |
Sbjct 2736 TCATTTATTCCTATATAGCC--TAATGAAATTGATGCTCTTCCATTTTTAAAAATTTCAA 2793
Query 37688 TGATATCGTCATCTGGATTCAGACGTACACCGCAGGCGCCTTCGACGTAAAGAATCGGAG 37747
| ||||| || |||||||| || | || ||||| || ||||| || | || || |
Sbjct 2794 TAATATCATCTTCTGGATTAAGTCTTATTCCGCAAGCACCTTCAGTATACAATATGGGGG 2853
Query 37748 CCACGCTTGCCTTAACGCCACGCAGACGATCAACACGTACCATTAGAGCTTGTTTAACTA 37807
| || | || || || || || | |||| | | ||||| | || |||| | |
Sbjct 2854 CAACCTTAGCTTTTACACCTTTGAGCCTTTCAATTCTTGTCATTAATGATTTTTTAGCAA 2913
Query 37808 CTTCCATACGCTCTTCCAGAAGCTCCCAGAAACGCAT--ATGATTGCC---GTTTGCGTC 37862
| || || || || | | || | | ||| || ||| ||
Sbjct 2914 --TATTTAATCTTTTTTCTAATATAAAATTAAATTTTTCAAAATTACCACATCCTGCTTC 2971
Query 37863 GAGTGCGATACGCGGCAGATTCAGAGTAACAACCCCTAGATTATTACGACCTTCGTGAAC 37922
| ||| || | || | ||| | | |||| || |||| |||||| | || |||||||
Sbjct 2972 AATTGCTATTCTGGGAATATTTAAACTAACCACACCTAAATTATTTCTTCCATCGTGAAT 3031
Query 37923 TTCATTGCCATTTTCGTCTTCCCAACGATGCAAGAAACTGCGGCATCCCATAGGGAACTT 37982
||| |||||||| ||||| || | | ||| || | ||| ||||| || |||
Sbjct 3032 ACTATTACCATTTTCATCTTCATAAACAGAAAGGAAGCTTCTGCACCCCATTGGCGTCTT 3091
Query 37983 AAAGCTGCCAGTTGTTTCAACAACTTTATCATAACTCAGAATATCTGGATACATACGCTT 38042
|||| |||||||| |||||||| |||||| | | |||||| |||||||| || |
Sbjct 3092 AAAGGAACCAGTTGTCCTAACAACTTGCTCATAATTTAAAATATCAGGATACATTCGTTG 3151
Query 38043 AGAAGCGCACTCCAGTGCCAGTTGCTTGATACGATAAAGCGGGTCAGT-TGGCTTCAAGT 38101
| | || || || |||||||| || ||| |||| || || | | ||| | |
Sbjct 3152 TGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTAGGATCGCTATTAATTCTATT 3211
Query 38102 TGTGTCCGTCTTTCAGAGCAAACACCAGTTTCGGGAACACCGGAGTGATACCCTCTTTGC 38161
||| || ||||| | ||||| || ||||| || || || | || | | ||| |
Sbjct 3212 TGT-CCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACTGCCGTTTTTTTATTTTTTC 3270
Query 38162 CAAGTCCAGCCAGTCGAACTTTCAAGATCGCTTCCTGAATCAGTTCAGCTTCCCAGCTTT 38221
| | ||| | || | | || || | || |||| || | ||| || |||
Sbjct 3271 CTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAA----TTAATCTTTCCTCTTTT 3326
Query 38222 ----CACCCAGACCAAAGCCGAATGTACAGAAGGGAGTTTGACCGTTCGCGGAGTGAAGA 38277
|| || ||||| || || ||| || || ||||| || || |||| || | |
Sbjct 3327 GTAATTCCAAGTCCAAAACCAAAAGTAACAAATGGGGTTTGTCCATTTGCGGTATGCAAA 3386
Query 38278 GTGTTCACCTCGTATTCGAGTCCCTGCATTGCATCATACACA-GCTTTGTGAGTCTTTGC 38336
|| || | || ||||| | ||| || | |||||| | ||| |||| | | | ||| |
Sbjct 3387 GTATTAATTTCATATTCTAATCCTTGAAAAGCATCA-AAACATTCTTTTTCAATTTTTTC 3445
Query 38337 AATAGCGTATTCTTTCGCATCTGGAATTTTCCAATAACGGGCTTCGTCCAAATGCTTTTC 38396
| || | |||| | | || || || || | | | ||| | | ||||
Sbjct 3446 ATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTCTTTAATTAACTTTAT 3505
Query 38397 ATGAGTCATCTTAACATACGGTGCCAGCACTTCGTCAATACGATTAATTGTGTTGCCGCC 38456
| || || ||||| || || | | || ||| ||||| || | || ||
Sbjct 3506 TTCAGAAGCTTTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACC 3565
Query 38457 GTAAATGTGACTTGCTACTTGCGCAATAATCTGAGCGACTACGGCAGCAGCGGTAGAAAT 38516
||| | |||||||| |||||||| || || ||||| || || | || || |||
Sbjct 3566 ATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAAT 3625
Query 38517 GCTTTTCGGAGTTTCGATCTGTGCATTTCCCATACGGAACCCGCGATCTAACATGCCTTT 38576
|||||||| || | |||||||| || || || | || | ||| |||||
Sbjct 3626 TGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTT 3685
Query 38577 GACATCTATCAACATGCAGTTAAACATTGGGAAGAATGGAGAATAGTCAAGATCATGGAA 38636
| ||| | ||||| || ||||||||||| || ||||| ||||| || | |||||| |
Sbjct 3686 TAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATA 3745
Query 38637 GTGCAGCCAGCCTTTTTCGTGTGCTTGCATAACTTCAACAGGAAG---ATAATGCTTTGC 38693
|| | |||||||| || || | | || || ||||| || || || ||
Sbjct 3746 ATGAATTTCACCTTTTTCATGAGCGTCAACTACGTCTTTGGGAAGTATATGATTTTTAGC 3805
Query 38694 AAAGTGCTTACTAACAATACCAGCAACCAGATCGCGTTGAGTAGGGATTACTTTAGCGTC 38753
| | || ||| || |||||||| | || ||| | |||||| || || || || ||
Sbjct 3806 ATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTGAGTTGGAATAACATTGCTATC 3865
Query 38754 TTTGTTAGCATTCTCATTCATGATGCCTTCATCTT 38788
||| |||||||| ||||| | ||| || |||||
Sbjct 3866 TTTATTAGCATTTTCATTTAGTATGGATTTATCTT 3900
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 745931182379760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |