Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq9465 161 2e-34 >seq9465 Length=7312 Score = 161 bits (178), Expect = 2e-34 Identities = 222/308 (72%), Gaps = 2/308 (1%) Strand=Plus/Plus Query 238591 TATGGAATTCCGCCCAGATACAAATGGTAAGACTAGGCAAAATGCATAGTTTCTTACGAA 238650 |||||||| | || || ||||| || ||| || ||||||||| |||| | || | Sbjct 6353 TATGGAATGCAGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCATGGTTTTATGCGCA 6412 Query 238651 TGTATTGGGCTAAAAAGATACTTGAATGGACTAGATCTCCAAAGGAAGCTCTTAGATATA 238710 |||||||||||||||| ||||| |||||| | | |||| || ||||| || || || Sbjct 6413 TGTATTGGGCTAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAAAGCT-TTGGAAATT 6471 Query 238711 G-TATTTATCTGAACGATAAATACGAACTCGACGGTACGGATCCTAACGGATACGTAGGT 238769 | || ||| |||| || || || | || ||||| | |||||||| || | || ||| Sbjct 6472 GCCATCTATTTGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAATGGTTTTGTTGGT 6531 Query 238770 TGTATGTGGTCAATATGTGGATTACACGATAGGGCATGGTCTGAGAGACCTATATTTGGA 238829 ||||||||||| || ||||| |||| ||| | |||| ||| ||| | | ||||| Sbjct 6532 TGTATGTGGTCGATTTGTGGCATACATGATCAAGGATGGGGTGAAAGAGCAGTTTTTGGT 6591 Query 238830 AAAGTTAGATACATGAATTATGAAGGAACTAAGAAAAAATTTGATGTAAATGCTTTTATC 238889 ||| | | |||||||| |||| || ||| ||||||||||| ||||||||| | Sbjct 6592 AAAATACGTTACATGAACTATGCTGGCTGTAAACGCAAATTTGATGTCAATGCTTTTGTT 6651 Query 238890 AGTAAATA 238897 | |||||| Sbjct 6652 ATTAAATA 6659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150940356085692