Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005336.1
Length=139962
Score E
Sequences producing significant alignments: (Bits) Value
seq1416 93.3 4e-14
>seq1416
Length=15246
Score = 93.3 bits (102), Expect = 4e-14
Identities = 177/259 (68%), Gaps = 4/259 (2%)
Strand=Plus/Plus
Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299
|| |||||||| || |||| ||||| || || || || ||||| || | ||||
Sbjct 1606 CCAGTAGAACCAAAACCAGCTTCGCCACGCTCAGTATCATCCAACTTGTCTGCTTCTTCC 1665
Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359
| | |||| | || |||||||| || | || || || | || || || ||
Sbjct 1666 AGTATGGGGTAGTAAATACGTTCGCAGATAAATTGTGCAATACGATCGCCACGTTTTACT 1725
Query 5360 TCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417
||||| || | || ||| ||||||| |||||| || | ||| || ||||||||||
Sbjct 1726 TCAAAATC--TACATCTGAATGATTAAACAACACCACGCCAATATTTCCACGGTAGTCTT 1783
Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477
| || | ||| || |||||||| || || || | ||| || || | || || ||||| |
Sbjct 1784 CATCTACAACACCGGCGCCCACATCTATGAAATTTTTAACTGCCAAACCAGAGCGTGGAG 1843
Query 5478 CTATGCGTCCGTAGCAACC 5496
| | ||||| ||||||||
Sbjct 1844 CCACACGTCCATAGCAACC 1862
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 447576622472880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |