Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq1416 93.3 4e-14 >seq1416 Length=15246 Score = 93.3 bits (102), Expect = 4e-14 Identities = 177/259 (68%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || |||||||| || |||| ||||| || || || || ||||| || | |||| Sbjct 1606 CCAGTAGAACCAAAACCAGCTTCGCCACGCTCAGTATCATCCAACTTGTCTGCTTCTTCC 1665 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | |||| | || |||||||| || | || || || | || || || || Sbjct 1666 AGTATGGGGTAGTAAATACGTTCGCAGATAAATTGTGCAATACGATCGCCACGTTTTACT 1725 Query 5360 TCAAAGTCGCTGTTTCCGAAG--TTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||| || | || ||| ||||||| |||||| || | ||| || |||||||||| Sbjct 1726 TCAAAATC--TACATCTGAATGATTAAACAACACCACGCCAATATTTCCACGGTAGTCTT 1783 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 | || | ||| || |||||||| || || || | ||| || || | || || ||||| | Sbjct 1784 CATCTACAACACCGGCGCCCACATCTATGAAATTTTTAACTGCCAAACCAGAGCGTGGAG 1843 Query 5478 CTATGCGTCCGTAGCAACC 5496 | | ||||| |||||||| Sbjct 1844 CCACACGTCCATAGCAACC 1862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447576622472880