Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005344.1
Length=39043
Score E
Sequences producing significant alignments: (Bits) Value
seq3548 185 2e-42
>seq3548
Length=8984
Score = 185 bits (204), Expect = 2e-42
Identities = 436/653 (67%), Gaps = 38/653 (6%)
Strand=Plus/Minus
Query 33484 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG 33543
|||||||||| | | |||||||| |||| ||| | || || ||||| | ||||| |
Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459
Query 33544 GTAGCC----TCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGC 33599
| ||| || |||||| | || | |||||||||| || ||||| || ||| ||
Sbjct 7458 GACGCCGGAGTC-CCGGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400
Query 33600 TGATG--CCATGTAGCTCAAGTACCTGACTGCGTA-ATACAGCCCGTCTGCCGTCTGGTT 33656
|| || ||| | ||| | ||||| |||||| | || | || |||||||| |
Sbjct 7399 TGGTGTTCCAGGC--CTCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343
Query 33657 TTTCAGGACGGTTTTT-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAG 33715
| || || | |||||| ||||||||||||||||| ||| || |||||
Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284
Query 33716 AGTGTGACCACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 33775
|| || || || || |||| || || | ||| || | ||| ||| || ||||
Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224
Query 33776 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTA 33835
| ||||| |||||||| |||||||||||||||||||| || |||||||||| ||||||||
Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164
Query 33836 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 33895
|||||| | | |||||| | || | || | |||
Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125
Query 33896 TTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAA 33955
|||| || || ||||| | |||| |||||||| | || | | || ||| |
Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065
Query 33956 CATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGG 34015
|| | |||| |||||| | || | ||||| ||||| |||||||||| || |
Sbjct 7064 CACTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAG 7005
Query 34016 ATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT 34075
|||| | ||||| || || | |||| ||| |||| |||||||||| ||| |
Sbjct 7004 CTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTAGT 6948
Query 34076 -GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 34127
| ||||||||||||||||| | | ||||||||| ||||| ||||||| ||
Sbjct 6947 GGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124769979482690
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |