Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005344.1 Length=39043 Score E Sequences producing significant alignments: (Bits) Value seq3548 185 2e-42 >seq3548 Length=8984 Score = 185 bits (204), Expect = 2e-42 Identities = 436/653 (67%), Gaps = 38/653 (6%) Strand=Plus/Minus Query 33484 CTGACAGCTGACCAGCCCCAGCTCTTTCATGAGCCTGCCAGCAAGCCAGCGTCCCATCTG 33543 |||||||||| | | |||||||| |||| ||| | || || ||||| | ||||| | Sbjct 7518 CTGACAGCTGGCGATGTCCAGCTCTGTCATTAGCTTACCGGCCAGCCAATGCCCCATTTT 7459 Query 33544 GTAGCC----TCTCCGGGTTGCCATTGTGGCGATGCTTCTTGCTCCGGCCGAACCGTGGC 33599 | ||| || |||||| | || | |||||||||| || ||||| || ||| || Sbjct 7458 GACGCCGGAGTC-CCGGGTAACGATGCTCGCGATGCTTCGGGCGCCGGCAGAGCCGCCGC 7400 Query 33600 TGATG--CCATGTAGCTCAAGTACCTGACTGCGTA-ATACAGCCCGTCTGCCGTCTGGTT 33656 || || ||| | ||| | ||||| |||||| | || | || |||||||| | Sbjct 7399 TGGTGTTCCAGGC--CTCCATGACCTGGCTGCGTTTAGTCACGCGCTCC-CCGTCTGGCT 7343 Query 33657 TTTCAGGACGGTTTTT-CCAGTATCTGTAGCTGCTGCGATGAACCCCGAACACATGGCAG 33715 | || || | |||||| ||||||||||||||||| ||| || ||||| Sbjct 7342 CATT-GGCCGAAGCCTGCCAGTACCTGTAGCTGCTGCGATGTACCTTAAAAGTCTGGCAC 7284 Query 33716 AGTGTGACCACAGGATAATGCGCTCTGAGTTTCCCGATTATCGAGAACTGTTCAGGGAGT 33775 || || || || || |||| || || | ||| || | ||| ||| || |||| Sbjct 7283 AGGATGGTGACCGGGTATCGCGCCCTCAGCCTGTCGACTACAGTAAACCGTTGAGTGAGT 7224 Query 33776 CTGACATCAAGAGCGCGGTAGCCTTTTTTAATATTTCATTCTCCATTTCAATGCGTTGTA 33835 | ||||| |||||||| |||||||||||||||||||| || |||||||||| |||||||| Sbjct 7223 CCGACATTAAGAGCGCCGTAGCCTTTTTTAATATTTCGTTTTCCATTTCAAGGCGTTGTA 7164 Query 33836 GCTTTTTCCTGAGCTCACGGATTTCAATTTGTTCCGGGGTAATGGGGGAGGCTTTTGGTG 33895 |||||| | | |||||| | || | || | ||| Sbjct 7163 TTTTTTTCTTCATCTCACGCAGCTCGAGCTG---------------------CTNAGGTT 7125 Query 33896 TTTTGCCCTGACGCTCATCACGCAGTTGTTTGACCCATCTTGTCATTGTGGAAAGGCCAA 33955 |||| || || ||||| | |||| |||||||| | || | | || ||| | Sbjct 7124 TTTTACCTTGTCGCTCCAGCCTGAGTTTATTGACCCAGCGAGTAAGAGCCGACTGGCTGA 7065 Query 33956 CATCCATAGCTTTGGCGGCATCTGCCACCGTGTATTTCTGGTCAACAACCAGTTGAGCGG 34015 || | |||| |||||| | || | ||||| ||||| |||||||||| || | Sbjct 7064 CACTAACCGCTTCGGCGGCTTTAGCAAATGTGTAGCCGTGGTCGACAACCAGTTTTGCAG 7005 Query 34016 ATTCGCGTTTAAACTCTGCGCTAAAATTTCtttttttCATTGGAGCACCTGTGTTGTTCT 34075 |||| | ||||| || || | |||| ||| |||| |||||||||| ||| | Sbjct 7004 CTTCGAGCTTAAATTCAGCCGTGAAAT---GTTTAGCCATTTGAGCACCTGTTGTGTAGT 6948 Query 34076 -GAGGTGAGCATATCACCTCTGTTCAGGTGGCCAAATTCAGTGTGCCACTTCA 34127 | ||||||||||||||||| | | ||||||||| ||||| ||||||| || Sbjct 6947 GGGGGTGAGCATATCACCTCCGATTAGGTGGCCAGTATCAGTATGCCACTACA 6895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124769979482690