Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005856.1 Length=94800 Score E Sequences producing significant alignments: (Bits) Value seq17985 251 4e-62 seq16447 95.1 7e-15 seq1262 84.2 1e-11 >seq17985 Length=3756 Score = 251 bits (278), Expect = 4e-62 Identities = 319/439 (73%), Gaps = 0/439 (0%) Strand=Plus/Plus Query 60531 TTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCCAATCGGATGCAATAAAGGCATCG 60590 ||||| ||||| ||||| || ||||||| || ||| | ||||| ||||| ||||| Sbjct 649 TTCTGGCCCGGGAGATGTTCGCGGCACAGCGATCCCCATCCTGATGCGATAAACGCATCA 708 Query 60591 TCAATCGACGCAGGCATAACGTCAACCCCAGGTACAACAGAAGGAACAATAAACTCCTCT 60650 || || || ||||| ||||| ||||| || |||||||| || | || | |||||| | Sbjct 709 TCGATTGAGGCAGGGATAACATCAACACCGGGTACAACGGACTGCACTACAAACTCATTC 768 Query 60651 AACAGCTCTTCACGGCTTACATTCTGCAACATAGCCTGTGCAGATGTTGCGTTTACGATA 60710 || |||||||||||| |||||||| | ||| ||||||||||| |||| | ||| ||| Sbjct 769 AAAAGCTCTTCACGGGACACATTCTGGAGCATTGCCTGTGCAGAGGTTGTCTCTACCATA 828 Query 60711 CCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCTGAAGATTGCGGATCAAGGTCAATA 60770 || | | | || | | |||||||||||| ||||| || || ||||| || | | Sbjct 829 CCCACGGCTCTGGTGTGATTAAGAAACATCGTTGCAGAAGACTGTGGGTCAAGATCCACA 888 Query 60771 ACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGGTGAGCACGCATTGCATGCGCCAGA 60830 ||||| || | | |||||| | ||||||||| || ||||||||||| |||| ||||| Sbjct 889 ACCAGGATGCGCAGATCCTCAAAAAGAAGATGTGGATGAGCACGCATACCATGAGCCAGG 948 Query 60831 GAAACCGTCGATACAGTTTTTGACACACCGCCTTTAAGATTGGAGATGAAAATCACATAC 60890 || || || || || || || || ||||| ||||| ||||| || || | | || Sbjct 949 GAGACGGTTGAAACGGTCTTCGATACACCCCCTTTGAGATTCCCGACAAATACCGTTAAC 1008 Query 60891 GCTTCGCTGTAGCGATCCCGGTATTTTGGCACTCCGCGATGTTCATATATGTCAATGATG 60950 ||||| | | || ||||||||||| || || | ||| | ||||| ||||||||| Sbjct 1009 GCTTCAGAATGCCTGTCACGGTATTTTGGAACCCCCCTATGATGGTATATATCAATGATG 1068 Query 60951 TTCTGAATTGACATCGCAT 60969 ||||| || ||| |||| Sbjct 1069 TTCTGGATATTCATGGCAT 1087 >seq16447 Length=7791 Score = 95.1 bits (104), Expect = 7e-15 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 60144 TCAAAAGACTCGCCGCAGCGTTCAAAACCGTCAAGGCGAGGGAGGAAGACATCAAGCATA 60203 ||||| ||||| ||||| ||||||||||| ||||| || || || |||||||||| Sbjct 7635 TCAAAGGACTCTCCGCACCGTTCAAAACCATCAAGACGCGGAAGAGCTGCATCAAGCATG 7694 Query 60204 TCCCCACCGAACACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTC 60263 || || || || | |||||||||||||| || || || || || || || || | Sbjct 7695 TCACCGCCAAATATCTCTTTAGCCAGGCTGTGACACATTTTGTGATCAGCTTTATTGGAC 7754 Query 60264 AACTTGGACATAAAACCAATGTTAG 60288 | ||| ||||| || |||||||||| Sbjct 7755 AGCTTTGACATGAAGCCAATGTTAG 7779 >seq1262 Length=72559 Score = 84.2 bits (92), Expect = 1e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 70932 CGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAA 70990 |||||| |||||||||| ||||||||| ||||||||||||| |||| | ||||||| Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836 Query 70991 GTCCGGTAGGGGCCACCA 71008 |||| | ||||||||||| Sbjct 63835 GTCCAGCAGGGGCCACCA 63818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 303120452862729