Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005856.1
Length=94800
Score E
Sequences producing significant alignments: (Bits) Value
seq17985 251 4e-62
seq16447 95.1 7e-15
seq1262 84.2 1e-11
>seq17985
Length=3756
Score = 251 bits (278), Expect = 4e-62
Identities = 319/439 (73%), Gaps = 0/439 (0%)
Strand=Plus/Plus
Query 60531 TTCTGACCCGGTAGATGCTCATTGCACAGCTCTCTCCAATCGGATGCAATAAAGGCATCG 60590
||||| ||||| ||||| || ||||||| || ||| | ||||| ||||| |||||
Sbjct 649 TTCTGGCCCGGGAGATGTTCGCGGCACAGCGATCCCCATCCTGATGCGATAAACGCATCA 708
Query 60591 TCAATCGACGCAGGCATAACGTCAACCCCAGGTACAACAGAAGGAACAATAAACTCCTCT 60650
|| || || ||||| ||||| ||||| || |||||||| || | || | |||||| |
Sbjct 709 TCGATTGAGGCAGGGATAACATCAACACCGGGTACAACGGACTGCACTACAAACTCATTC 768
Query 60651 AACAGCTCTTCACGGCTTACATTCTGCAACATAGCCTGTGCAGATGTTGCGTTTACGATA 60710
|| |||||||||||| |||||||| | ||| ||||||||||| |||| | ||| |||
Sbjct 769 AAAAGCTCTTCACGGGACACATTCTGGAGCATTGCCTGTGCAGAGGTTGTCTCTACCATA 828
Query 60711 CCAATAGAGTGTTTATGGCTTAAAAACATCGTTGCTGAAGATTGCGGATCAAGGTCAATA 60770
|| | | | || | | |||||||||||| ||||| || || ||||| || | |
Sbjct 829 CCCACGGCTCTGGTGTGATTAAGAAACATCGTTGCAGAAGACTGTGGGTCAAGATCCACA 888
Query 60771 ACCAGAATCCTTAAATCCTCCATAAGAAGATGAGGGTGAGCACGCATTGCATGCGCCAGA 60830
||||| || | | |||||| | ||||||||| || ||||||||||| |||| |||||
Sbjct 889 ACCAGGATGCGCAGATCCTCAAAAAGAAGATGTGGATGAGCACGCATACCATGAGCCAGG 948
Query 60831 GAAACCGTCGATACAGTTTTTGACACACCGCCTTTAAGATTGGAGATGAAAATCACATAC 60890
|| || || || || || || || ||||| ||||| ||||| || || | | ||
Sbjct 949 GAGACGGTTGAAACGGTCTTCGATACACCCCCTTTGAGATTCCCGACAAATACCGTTAAC 1008
Query 60891 GCTTCGCTGTAGCGATCCCGGTATTTTGGCACTCCGCGATGTTCATATATGTCAATGATG 60950
||||| | | || ||||||||||| || || | ||| | ||||| |||||||||
Sbjct 1009 GCTTCAGAATGCCTGTCACGGTATTTTGGAACCCCCCTATGATGGTATATATCAATGATG 1068
Query 60951 TTCTGAATTGACATCGCAT 60969
||||| || ||| ||||
Sbjct 1069 TTCTGGATATTCATGGCAT 1087
>seq16447
Length=7791
Score = 95.1 bits (104), Expect = 7e-15
Identities = 108/145 (74%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 60144 TCAAAAGACTCGCCGCAGCGTTCAAAACCGTCAAGGCGAGGGAGGAAGACATCAAGCATA 60203
||||| ||||| ||||| ||||||||||| ||||| || || || ||||||||||
Sbjct 7635 TCAAAGGACTCTCCGCACCGTTCAAAACCATCAAGACGCGGAAGAGCTGCATCAAGCATG 7694
Query 60204 TCCCCACCGAACACTTCTTTAGCCAGGCTATGGCAATACTTATGGTCTGCCTTGTTACTC 60263
|| || || || | |||||||||||||| || || || || || || || || |
Sbjct 7695 TCACCGCCAAATATCTCTTTAGCCAGGCTGTGACACATTTTGTGATCAGCTTTATTGGAC 7754
Query 60264 AACTTGGACATAAAACCAATGTTAG 60288
| ||| ||||| || ||||||||||
Sbjct 7755 AGCTTTGACATGAAGCCAATGTTAG 7779
>seq1262
Length=72559
Score = 84.2 bits (92), Expect = 1e-11
Identities = 66/78 (85%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 70932 CGGCCCTTTAGCTCAGT-GGTTAGAGCTGGCGACTCATAATCGCACGGTCACCGGTTCAA 70990
|||||| |||||||||| ||||||||| ||||||||||||| |||| | |||||||
Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836
Query 70991 GTCCGGTAGGGGCCACCA 71008
|||| | |||||||||||
Sbjct 63835 GTCCAGCAGGGGCCACCA 63818
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 303120452862729
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |