Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005859.1 Length=121750 Score E Sequences producing significant alignments: (Bits) Value seq2789 89.7 4e-13 seq2698 84.2 2e-11 >seq2789 Length=15484 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 54503 TGAAAAAGAAGTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTTCAA 54562 |||||||||| | |||||||| ||| || |||| ||||| || ||||| || | Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378 Query 54563 CTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGC 54622 | | ||||| || | |||||| |||||||||||||||| || |||| | | || | Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318 Query 54623 ACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAATAAACG 54682 | | |||| || ||| ||||| | | | | || |||| ||||| | |||||| Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258 Query 54683 TACAGCTATCTTTCCGAAACTGGTGTTTG 54711 || || | ||||| ||||| || |||| Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTG 3229 >seq2698 Length=11445 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 27682 TAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACAGCGTACCCTGAAA 27741 ||||||| || | || |||||| | || | | |||||| | ||||| || ||||||| Sbjct 5480 TAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAA 5421 Query 27742 CACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCCAAAAGCTGATCAC 27801 | | || ||||| || ||||||||||||||||||| |||||| | ||| || Sbjct 5420 CCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTT 5361 Query 27802 GACTTAACACATTGACATTTAGGTGTTGACCACCTTCAA 27840 | | || || ||||||| ||||| |||||||||| Sbjct 5360 TTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAA 5322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 389327818811279