Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005859.1
Length=121750
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 89.7 4e-13
seq2698 84.2 2e-11
>seq2789
Length=15484
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 54503 TGAAAAAGAAGTCTATGATGCTTGTCAGGGTCTAGAGTATGAGATCAATACGATGTTCAA 54562
|||||||||| | |||||||| ||| || |||| ||||| || ||||| || |
Sbjct 3437 TGAAAAAGAATGTTTTGATGCTTTTCAAGGATTAGAATATGAAATTAATACTTTGCATAC 3378
Query 54563 CTCTAATGGTCAGAGTCCATTTATTACTTTTGGTTTTGGTCTAGGAACTTCTTGGGAAGC 54622
| | ||||| || | |||||| |||||||||||||||| || |||| | | || |
Sbjct 3377 CGCAAATGGACAAACCCCATTTGTTACTTTTGGTTTTGGACTTGGAATTACAAAAGAGGA 3318
Query 54623 ACGTCTAATACAGAAAGCAATACTGAAAGTACGTATGGATGGCTTAGGCATCAATAAACG 54682
| | |||| || ||| ||||| | | | | || |||| ||||| | ||||||
Sbjct 3317 AAGATTAATTCAAAAATCAATATTAAGAAACAGAATAAATGGGTTAGGAAAAAATAAAAA 3258
Query 54683 TACAGCTATCTTTCCGAAACTGGTGTTTG 54711
|| || | ||||| ||||| || ||||
Sbjct 3257 AACGGCAGTATTTCCAAAACTTGTTTTTG 3229
>seq2698
Length=11445
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/159 (72%), Gaps = 0/159 (0%)
Strand=Plus/Minus
Query 27682 TAATAACGTCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGCACAGCGTACCCTGAAA 27741
||||||| || | || |||||| | || | | |||||| | ||||| || |||||||
Sbjct 5480 TAATAACATCTTGTTGTTGTTCAGGTGTTAAAGAGTTAAATCTAACAGCATATCCTGAAA 5421
Query 27742 CACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTTCTGTGCATCCAAAAGCTGATCAC 27801
| | || ||||| || ||||||||||||||||||| |||||| | ||| ||
Sbjct 5420 CCCTAATTGTTAACTGCGGGTATTTTTCAGGATGTTCTACTGCATCAAGAAGTGTTTCTT 5361
Query 27802 GACTTAACACATTGACATTTAGGTGTTGACCACCTTCAA 27840
| | || || ||||||| ||||| ||||||||||
Sbjct 5360 TTCGAAGAACGTTTACATTTAAATGTTGTCCACCTTCAA 5322
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 389327818811279
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |