Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_005902.1
Length=186250
Score E
Sequences producing significant alignments: (Bits) Value
seq4354 116 4e-21
>seq4354
Length=2790
Score = 116 bits (128), Expect = 4e-21
Identities = 262/395 (66%), Gaps = 18/395 (5%)
Strand=Plus/Minus
Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------- 164773
||||| | ||| |||||||||| || ||||| ||||||| ||||||||
Sbjct 1409 TTACACATAATTATTTTTGATGAAATTGATGCCATTTGCAAGCAACGTGGTTCGGTGGCA 1350
Query 164774 ----ATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829
| | | | | ||||| | || || ||||| ||| | ||||||| ||||||||
Sbjct 1349 GGCAACAGTGGTGTGCATGACACTGTTGTCAATCAATTGTTGGCTAAAATCGATGGTGTC 1290
Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889
||| || ||||||||||| || | || ||||| || || | ||| | ||||| |||
Sbjct 1289 GAACAATTGAATAATATTTTGGTTATTGGCATGACAAATCGTCGTGACATGATTGACGAT 1230
Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949
|| || | || |||||||| |||||| || |||| ||||| | || ||| | || |
Sbjct 1229 GCCTTGATGCGTCCTGGTCGTTTAGAAGTGCAAATGGAAATTAGCTTGCCCAATGAACAG 1170
Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCT 165009
||||| | |||||| | || | ||| || ||| | | | ||| |
Sbjct 1169 GGACGAGTGCAAATTCTCAACATACATACTGCGCGCATGCGTGATTACAACAAATTGGCA 1110
Query 165010 CCCGATGTAGATTTAAATAAAATAGCTGCCGAA---ACTAAAAATTATAGTGGTGCTGAA 165066
|| |||||||| | || | || ||| ||| || || |||| |||||||| |||
Sbjct 1109 CCAGATGTAGACTGCAAGGAGAT---TGCAGAATTGACAAAGAATTTCAGTGGTGCAGAA 1053
Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101
|| ||||| || || | || || ||||| || ||
Sbjct 1052 TTGGAGGGTTTGGTGCGTGCTGCCCAATCCACAGC 1018
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 595640734628400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |