Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq4354 116 4e-21 >seq4354 Length=2790 Score = 116 bits (128), Expect = 4e-21 Identities = 262/395 (66%), Gaps = 18/395 (5%) Strand=Plus/Minus Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAAACGTGGTG-------- 164773 ||||| | ||| |||||||||| || ||||| ||||||| |||||||| Sbjct 1409 TTACACATAATTATTTTTGATGAAATTGATGCCATTTGCAAGCAACGTGGTTCGGTGGCA 1350 Query 164774 ----ATAATATTATTCATGATGCAGTGGTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 | | | | | ||||| | || || ||||| ||| | ||||||| |||||||| Sbjct 1349 GGCAACAGTGGTGTGCATGACACTGTTGTCAATCAATTGTTGGCTAAAATCGATGGTGTC 1290 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 ||| || ||||||||||| || | || ||||| || || | ||| | ||||| ||| Sbjct 1289 GAACAATTGAATAATATTTTGGTTATTGGCATGACAAATCGTCGTGACATGATTGACGAT 1230 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 || || | || |||||||| |||||| || |||| ||||| | || ||| | || | Sbjct 1229 GCCTTGATGCGTCCTGGTCGTTTAGAAGTGCAAATGGAAATTAGCTTGCCCAATGAACAG 1170 Query 164950 GGACGCCTTCAAATTTTAAAAGTTCATGTGGCTAAAATGAAATCCTGTGATATATTATCT 165009 ||||| | |||||| | || | ||| || ||| | | | ||| | Sbjct 1169 GGACGAGTGCAAATTCTCAACATACATACTGCGCGCATGCGTGATTACAACAAATTGGCA 1110 Query 165010 CCCGATGTAGATTTAAATAAAATAGCTGCCGAA---ACTAAAAATTATAGTGGTGCTGAA 165066 || |||||||| | || | || ||| ||| || || |||| |||||||| ||| Sbjct 1109 CCAGATGTAGACTGCAAGGAGAT---TGCAGAATTGACAAAGAATTTCAGTGGTGCAGAA 1053 Query 165067 TTAGAGGGATTAGTAAGAGCCGCTCAATCAACCGC 165101 || ||||| || || | || || ||||| || || Sbjct 1052 TTGGAGGGTTTGGTGCGTGCTGCCCAATCCACAGC 1018 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595640734628400