Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq18404 123 1e-23 seq5057 123 1e-23 seq6105 113 2e-20 seq1502 113 2e-20 >seq18404 Length=2142 Score = 123 bits (136), Expect = 1e-23 Identities = 95/111 (86%), Gaps = 8/111 (7%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||||||| ||||||| | ||||||||||| |||||||||| ||||||||| Sbjct 1217 AAATATAGAA------AAAAATCTA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 1269 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTCGACGATT 11539 |||||||||||||||||||| |||||||||||||||||||| ||| |||| Sbjct 1270 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC-TCGTTGATT 1319 >seq5057 Length=1555 Score = 123 bits (136), Expect = 1e-23 Identities = 88/101 (87%), Gaps = 7/101 (7%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||||||| ||||||| | ||||||||||| |||||||||| ||||||||| Sbjct 1455 AAATATAGAA------AAAAATCTA-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 1403 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| |||||||||||||||||||| Sbjct 1402 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCC 1362 >seq6105 Length=3325 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 1252 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 1193 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 1192 TGAGCTAATGGGCC 1179 >seq1502 Length=1555 Score = 113 bits (124), Expect = 2e-20 Identities = 69/74 (93%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 156 TGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 97 Query 11516 TGAGCTAATGGGCC 11529 |||||||||||||| Sbjct 96 TGAGCTAATGGGCC 83 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261392249196724