Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_006966.1
Length=166259
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 159 4e-34
>seq12187
Length=3570
Score = 159 bits (176), Expect = 4e-34
Identities = 473/724 (65%), Gaps = 16/724 (2%)
Strand=Plus/Minus
Query 21281 TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATT 21340
|||| | ||||| ||| | ||| | ||| || ||||| |||||||||| | ||||
Sbjct 1746 TTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATA 1687
Query 21341 AATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT 21400
| || |||||||| || |||| || ||||| || || | || | ||| || ||||
Sbjct 1686 AGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCT 1627
Query 21401 ATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAAT 21460
|| || || ||| || || | | ||| | |||||| | || ||
Sbjct 1626 ATTTTTACAGCCTCACATATGATTTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAA 1567
Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520
||||| ||||||||||| ||||| ||||||||||| ||||| || | || | |||
Sbjct 1566 TGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCA 1507
Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA- 21579
|| || ||||| | || ||||| | || | || || | ||| || || || || ||
Sbjct 1506 TTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAA 1447
Query 21580 -TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT-CGTTCACCGTAT 21637
||| ||||| |||||| |||||||| || |||||||| | |||| || ||||| |
Sbjct 1446 CTGCCACTGAA--GAAAATACCCTCAACAGCTGCAAATGCTA-TAATACGCTCACCAAAA 1390
Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697
| | ||| | ||||| ||||| | ||||| | |||| | |
Sbjct 1389 TTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGC 1330
Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAt----ttttttCATCTACATCGGTTATGNNNNN 21753
| || ||||| || || || ||| || || ||| | | || || ||||
Sbjct 1329 AGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGT-CA-CG--TATGTAGGT 1274
Query 21754 NNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813
|| ||||||||||| || | |||||| || || || || || || ||
Sbjct 1273 GTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATA 1214
Query 21814 AAAACATCTTGCCTCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCAT 21872
|||||| | ||||| | ||| || || | | ||| || | |||| |||||||
Sbjct 1213 AAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAA-CGCTCTACCAAATTTTCAT 1155
Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932
| || || |||||| |||||| ||||||||||| | || |||||||| | || |
Sbjct 1154 TGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCAT 1095
Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCC 21992
||||||| ||||||| ||| || | ||| || ||||||| ||||| || |||||
Sbjct 1094 TATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCC 1035
Query 21993 AAAA 21996
||||
Sbjct 1034 AAAA 1031
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 531694362650760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |