Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq12187 159 4e-34 >seq12187 Length=3570 Score = 159 bits (176), Expect = 4e-34 Identities = 473/724 (65%), Gaps = 16/724 (2%) Strand=Plus/Minus Query 21281 TTATTACAACCCAGTTCTGATAATAATCTATCTGCTACAAATTCTATATATTGACACATT 21340 |||| | ||||| ||| | ||| | ||| || ||||| |||||||||| | |||| Sbjct 1746 TTATCAACACCCAATTCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATA 1687 Query 21341 AATTCACAATTCATACCGATCAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCT 21400 | || |||||||| || |||| || ||||| || || | || | ||| || |||| Sbjct 1686 AGTTTGCAATTCATGCCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCT 1627 Query 21401 ATAGAGACGGCTTCAACAATTATATTTATTATCCTAGATGTACTAGGGGGATACAATAAT 21460 || || || ||| || || | | ||| | |||||| | || || Sbjct 1626 ATTTTTACAGCCTCACATATGATTTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAA 1567 Query 21461 TGTTTAAACATCAAACATGCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCA 21520 ||||| ||||||||||| ||||| ||||||||||| ||||| || | || | ||| Sbjct 1566 TGTTTGAACATCAAACAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCA 1507 Query 21521 TTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAA- 21579 || || ||||| | || ||||| | || | || || | ||| || || || || || Sbjct 1506 TTGGAGAATGTCAGGCCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAA 1447 Query 21580 -TGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATGCAACTAAT-CGTTCACCGTAT 21637 ||| ||||| |||||| |||||||| || |||||||| | |||| || ||||| | Sbjct 1446 CTGCCACTGAA--GAAAATACCCTCAACAGCTGCAAATGCTA-TAATACGCTCACCAAAA 1390 Query 21638 GTAGATTCTTTATCCAATATCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCA 21697 | | ||| | ||||| ||||| | ||||| | |||| | | Sbjct 1389 TTGGCCGATTTCGATGAGATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGC 1330 Query 21698 ATTGTATCAATAGCTTTTAAAAGATGAt----ttttttCATCTACATCGGTTATGNNNNN 21753 | || ||||| || || || ||| || || ||| | | || || |||| Sbjct 1329 AGCGTTTCAATGGCGTTAAATAGAAAATCACGTTGTTTTGTGT-CA-CG--TATGTAGGT 1274 Query 21754 NNNNNNNNNNNNACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTA 21813 || ||||||||||| || | |||||| || || || || || || || Sbjct 1273 GTCAATCAAAATGCTGTACATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATA 1214 Query 21814 AAAACATCTTGCCTCTGAACATTGAACCTCG-GAATAAAATCGTTGAGCCAAGTTTTCAT 21872 |||||| | ||||| | ||| || || | | ||| || | |||| ||||||| Sbjct 1213 AAAACAACGCGCCTCAGTTATTTGTACTTCTTGGCTGAAA-CGCTCTACCAAATTTTCAT 1155 Query 21873 TTACTATTCCATCACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGT 21932 | || || |||||| |||||| ||||||||||| | || |||||||| | || | Sbjct 1154 TGACAATGCCATCAGAGGCGGCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCAT 1095 Query 21933 TATCTGTTAATTTTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCC 21992 ||||||| ||||||| ||| || | ||| || ||||||| ||||| || ||||| Sbjct 1094 TATCTGTCAATTTTTCCCAGTCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCC 1035 Query 21993 AAAA 21996 |||| Sbjct 1034 AAAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531694362650760