Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 381 7e-101
seq4853 354 1e-92
seq12187 284 2e-71
>seq2021
Length=2943
Score = 381 bits (422), Expect = 7e-101
Identities = 966/1468 (66%), Gaps = 41/1468 (3%)
Strand=Plus/Minus
Query 61989 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62048
|||| || ||||| || | | || || || ||||| || | ||| ||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 62049 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 62108
|| | || |||| ||||| ||||| || || ||||| |||| |||| ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 62109 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62168
|| | ||| || || | |||||||||||||| || || || || | || || ||||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970
Query 62169 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 62227
|| || |||||| | ||| ||||||| || || || || || | | || |
Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910
Query 62228 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62285
| | | | |||| || |||||||||| || | ||||| ||| || || |||
Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850
Query 62286 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62345
|||| ||||| | |||||| ||| | | || | ||| |||| || || || |||
Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790
Query 62346 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62405
|| ||||||||||| | || || || |||||| ||||| || || | || ||||||
Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730
Query 62406 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62465
|| |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| |
Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670
Query 62466 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62523
| || ||||| | ||||| || || || |||||||||| ||||| | |||
Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612
Query 62524 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62583
|||| ||| || || ||| | ||| || |||| || |
Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552
Query 62584 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 62620
| || || || ||| ||||||||| | ||||| || ||
Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492
Query 62621 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 62680
|| || ||||| |||||||| ||||| || || | | |||||| | |||||||
Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432
Query 62681 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740
|| ||| |||||||| | ||| || || || || || |||||||| || ||||||||
Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372
Query 62741 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62800
|| || | ||| | | |||| || | || || || | || || ||||| || ||
Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312
Query 62801 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62857
||| ||||| || | ||| | | |||||| || | || || || ||||| |||
Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255
Query 62858 ATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAAC 62914
|||| | | ||| | |||||||| || | |||| || || | |||||||||
Sbjct 1254 ATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAAC 1195
Query 62915 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62974
|| | |||| | ||| ||||| || || |||||||| | ||| || ||||||||
Sbjct 1194 AGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135
Query 62975 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63034
||| |||| ||| |||||||||||||| ||||| ||||||||||| || || ||||
Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075
Query 63035 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63094
||| |||||||| | ||||| |||||||| || ||| | | | |||| || | |
Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015
Query 63095 -AGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63153
|||| | | | | ||| | || ||| ||| | | | ||||| || || ||||
Sbjct 1014 GCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956
Query 63154 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63213
|||| | | | ||| || || | | || ||||| | ||||| || || || |||
Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896
Query 63214 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63273
||| |||||||| || | || || ||||| ||||| ||||| ||||| | | ||
Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836
Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333
|| || || || ||||| || || | ||| | ||| | | ||||| || ||||| |
Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776
Query 63334 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63393
|||| || || ||||| | | || || |||||| ||||||||||| | ||| | |
Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCG 716
Query 63394 CGGTGTTATTATAAACTCTCAACATTGG 63421
| |||||| | || | || ||| ||
Sbjct 715 CCACGTTATTGAACACACGCAGCATAGG 688
>seq4853
Length=2014
Score = 354 bits (392), Expect = 1e-92
Identities = 867/1305 (66%), Gaps = 17/1305 (1%)
Strand=Plus/Plus
Query 62544 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62603
|||| ||| || || ||| | || || |||| || || || || || |||||||
Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203
Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663
|| | ||||| || || || || ||||| |||||||| ||||| || || | | ||||
Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263
Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723
|| | ||||||| || ||| |||||||| | ||| || || || || || |||
Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323
Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783
||||| || |||||||| || || | ||| | | |||| || | || || || |
Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383
Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 62840
|| || ||||| || ||||| ||||| || | ||| | | |||||| || | ||
Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440
Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897
|| || ||||| ||||||| | | ||| | |||||||| || | ||||
Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATT 500
Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957
|| || | ||||||||| || | |||| | ||| ||||| || || ||||||||
Sbjct 501 GAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCAT 560
Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017
| ||| || ||||||||||| |||| ||| |||||||||||||| ||||| ||||||
Sbjct 561 AAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCC 620
Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077
||||| || || ||||||| |||||||| | |||| |||||||| || ||| | |
Sbjct 621 TTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAG 680
Query 63078 ACTCGAGCCTTTATTAT-AGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136
| |||| || | | |||| | | | | ||| | || ||| ||| | | |
Sbjct 681 GTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTG 739
Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196
||||| || || |||||||| | | | ||| || || | | || ||||| | ||
Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799
Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255
||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| |
Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAGA 858
Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315
||| ||||| | | || || || || || ||||| || || | ||| | ||| | |
Sbjct 859 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 918
Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375
||||| || ||||| |||||||| || ||||| | | || || |||||| ||||
Sbjct 919 ATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTC 978
Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435
||||||| | ||| | || |||||| | || | || ||| || | | ||| || |
Sbjct 979 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAG 1038
Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63493
| | ||||| || || | || | || |||| || || | | | ||| ||
Sbjct 1039 AGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CAG 1096
Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553
|| || || ||||| || ||||| | |||||| | | || | | | |||||
Sbjct 1097 GCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATACC 1156
Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613
||| ||| ||| | | ||| | || || |||||| |||| ||| | || || ||
Sbjct 1157 CTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTGT 1216
Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673
| ||| |||| || ||||| ||||| ||||| | || || |||| ||||||
Sbjct 1217 GGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGTA 1276
Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733
|| || || || | || |||||| || || || || || |||||||| | |
Sbjct 1277 GGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTAG 1336
Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793
|| ||||| | || || || | || |||||||| || ||||| ||| | ||
Sbjct 1337 ATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTGT 1396
Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838
|| || || || || || || |||||| || || ||||||||
Sbjct 1397 CTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441
Score = 93.3 bits (102), Expect = 5e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 63959 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018
|||| |||||| ||||| ||||||| ||| || || || ||||| || || | ||| ||
Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775
Query 64019 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078
||| |||| ||| ||||| || ||||| || |||| || |||| | ||||||||||
Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835
Query 64079 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117
| ||| | |||||| ||| | || | ||||| ||
Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874
>seq12187
Length=3570
Score = 284 bits (314), Expect = 2e-71
Identities = 489/704 (69%), Gaps = 7/704 (1%)
Strand=Plus/Minus
Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197
||| || || || ||||||||| ||| | || |||||||| || || || || ||
Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658
Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 33257
|| || || |||| ||||| |||||||| || ||| || || ||| || ||
Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATT--TCA 1600
Query 33258 A--ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315
| | | || ||| ||| |||| |||||||| ||||||||||| || || ||
Sbjct 1599 AGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCA 1540
Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375
|| |||| || ||||| | ||| || || ||||| || || || || ||||| ||
Sbjct 1539 CAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGA 1480
Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435
||||| || |||||||| || || || ||||| ||| ||||| || || || ||
Sbjct 1479 CCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACA 1420
Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGA 33492
|| ||||| || |||| | ||| ||| || ||| | | || ||| |||||
Sbjct 1419 GCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATG 1360
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
|||||||| |||||||| || ||| ||||| |||||| ||||| ||||| ||| | |
Sbjct 1359 GCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCA 1300
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
|| || | || | || || || ||||||| || |||||||| || || |
Sbjct 1299 CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACA 1240
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
||||| ||||| || || || || || ||||| | ||||| || || |||||||||
Sbjct 1239 TTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGG 1180
Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732
| || || || ||||||||||||| || || || ||| ||| || ||||| |||||
Sbjct 1179 CTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAA 1120
Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792
||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| ||
Sbjct 1119 ACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTG 1060
Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836
||| ||| ||||| ||||||||||||||||| || || |||||
Sbjct 1059 CATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622705426404840
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