Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2021 381 7e-101 seq4853 354 1e-92 seq12187 284 2e-71 >seq2021 Length=2943 Score = 381 bits (422), Expect = 7e-101 Identities = 966/1468 (66%), Gaps = 41/1468 (3%) Strand=Plus/Minus Query 61989 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 62048 |||| || ||||| || | | || || || ||||| || | ||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 62049 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 62108 || | || |||| ||||| ||||| || || ||||| |||| |||| || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 62109 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62168 || | ||| || || | |||||||||||||| || || || || | || || |||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 62169 TTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 62227 || || |||||| | ||| ||||||| || || || || || | | || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 62228 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62285 | | | | |||| || |||||||||| || | ||||| ||| || || ||| Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 62286 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62345 |||| ||||| | |||||| ||| | | || | ||| |||| || || || ||| Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790 Query 62346 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACTCATTA 62405 || ||||||||||| | || || || |||||| ||||| || || | || |||||| Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730 Query 62406 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62465 || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| | Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670 Query 62466 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62523 | || ||||| | ||||| || || || |||||||||| ||||| | ||| Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612 Query 62524 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62583 |||| ||| || || ||| | ||| || |||| || | Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552 Query 62584 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 62620 | || || || ||| ||||||||| | ||||| || || Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492 Query 62621 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAG 62680 || || ||||| |||||||| ||||| || || | | |||||| | ||||||| Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432 Query 62681 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62740 || ||| |||||||| | ||| || || || || || |||||||| || |||||||| Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372 Query 62741 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62800 || || | ||| | | |||| || | || || || | || || ||||| || || Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312 Query 62801 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62857 ||| ||||| || | ||| | | |||||| || | || || || ||||| ||| Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255 Query 62858 ATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAAC 62914 |||| | | ||| | |||||||| || | |||| || || | ||||||||| Sbjct 1254 ATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAAC 1195 Query 62915 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62974 || | |||| | ||| ||||| || || |||||||| | ||| || |||||||| Sbjct 1194 AGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135 Query 62975 AGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 63034 ||| |||| ||| |||||||||||||| ||||| ||||||||||| || || |||| Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075 Query 63035 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 63094 ||| |||||||| | ||||| |||||||| || ||| | | | |||| || | | Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015 Query 63095 -AGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63153 |||| | | | | ||| | || ||| ||| | | | ||||| || || |||| Sbjct 1014 GCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956 Query 63154 AAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63213 |||| | | | ||| || || | | || ||||| | ||||| || || || ||| Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896 Query 63214 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63273 ||| |||||||| || | || || ||||| ||||| ||||| ||||| | | || Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836 Query 63274 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63333 || || || || ||||| || || | ||| | ||| | | ||||| || ||||| | Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776 Query 63334 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63393 |||| || || ||||| | | || || |||||| ||||||||||| | ||| | | Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCG 716 Query 63394 CGGTGTTATTATAAACTCTCAACATTGG 63421 | |||||| | || | || ||| || Sbjct 715 CCACGTTATTGAACACACGCAGCATAGG 688 >seq4853 Length=2014 Score = 354 bits (392), Expect = 1e-92 Identities = 867/1305 (66%), Gaps = 17/1305 (1%) Strand=Plus/Plus Query 62544 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62603 |||| ||| || || ||| | || || |||| || || || || || ||||||| Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203 Query 62604 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62663 || | ||||| || || || || ||||| |||||||| ||||| || || | | |||| Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263 Query 62664 AGATCTTGTGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAAT 62723 || | ||||||| || ||| |||||||| | ||| || || || || || ||| Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323 Query 62724 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62783 ||||| || |||||||| || || | ||| | | |||| || | || || || | Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383 Query 62784 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 62840 || || ||||| || ||||| ||||| || | ||| | | |||||| || | || Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440 Query 62841 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAAGGCAACA 62897 || || ||||| ||||||| | | ||| | |||||||| || | |||| Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATT 500 Query 62898 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62957 || || | ||||||||| || | |||| | ||| ||||| || || |||||||| Sbjct 501 GAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCAT 560 Query 62958 AGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 63017 | ||| || ||||||||||| |||| ||| |||||||||||||| ||||| |||||| Sbjct 561 AAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCC 620 Query 63018 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 63077 ||||| || || ||||||| |||||||| | |||| |||||||| || ||| | | Sbjct 621 TTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAG 680 Query 63078 ACTCGAGCCTTTATTAT-AGATTTGTATCTCCTTTCTCTTTCGTATAGTGTATACAATCG 63136 | |||| || | | |||| | | | | ||| | || ||| ||| | | | Sbjct 681 GTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTG 739 Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||| || || |||||||| | | | ||| || || | | || ||||| | || Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799 Query 63197 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63255 ||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| | Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAGA 858 Query 63256 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63315 ||| ||||| | | || || || || || ||||| || || | ||| | ||| | | Sbjct 859 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 918 Query 63316 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63375 ||||| || ||||| |||||||| || ||||| | | || || |||||| |||| Sbjct 919 ATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTC 978 Query 63376 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTG 63435 ||||||| | ||| | || |||||| | || | || ||| || | | ||| || | Sbjct 979 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAG 1038 Query 63436 ATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63493 | | ||||| || || | || | || |||| || || | | | ||| || Sbjct 1039 AGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CAG 1096 Query 63494 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACC 63553 || || || ||||| || ||||| | |||||| | | || | | | ||||| Sbjct 1097 GCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATACC 1156 Query 63554 CTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63613 ||| ||| ||| | | ||| | || || |||||| |||| ||| | || || || Sbjct 1157 CTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTGT 1216 Query 63614 TCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTA 63673 | ||| |||| || ||||| ||||| ||||| | || || |||| |||||| Sbjct 1217 GGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGTA 1276 Query 63674 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63733 || || || || | || |||||| || || || || || |||||||| | | Sbjct 1277 GGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTAG 1336 Query 63734 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63793 || ||||| | || || || | || |||||||| || ||||| ||| | || Sbjct 1337 ATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTGT 1396 Query 63794 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 || || || || || || || |||||| || || |||||||| Sbjct 1397 CTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441 Score = 93.3 bits (102), Expect = 5e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63959 AAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAATGGC 64018 |||| |||||| ||||| ||||||| ||| || || || ||||| || || | ||| || Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775 Query 64019 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 64078 ||| |||| ||| ||||| || ||||| || |||| || |||| | |||||||||| Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835 Query 64079 TACCGTTGTTACTCCATTATATATTCCTTGAATAACCTT 64117 | ||| | |||||| ||| | || | ||||| || Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874 >seq12187 Length=3570 Score = 284 bits (314), Expect = 2e-71 Identities = 489/704 (69%), Gaps = 7/704 (1%) Strand=Plus/Minus Query 33138 ATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 33197 ||| || || || ||||||||| ||| | || |||||||| || || || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 33198 TGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATAGATCT 33257 || || || |||| ||||| |||||||| || ||| || || ||| || || Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATT--TCA 1600 Query 33258 A--ACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAATCG 33315 | | | || ||| ||| |||| |||||||| ||||||||||| || || || Sbjct 1599 AGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCA 1540 Query 33316 CAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGG 33375 || |||| || ||||| | ||| || || ||||| || || || || ||||| || Sbjct 1539 CAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGA 1480 Query 33376 CCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACT 33435 ||||| || |||||||| || || || ||||| ||| ||||| || || || || Sbjct 1479 CCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACA 1420 Query 33436 GCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGA 33492 || ||||| || |||| | ||| ||| || ||| | | || ||| ||||| Sbjct 1419 GCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATG 1360 Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 |||||||| |||||||| || ||| ||||| |||||| ||||| ||||| ||| | | Sbjct 1359 GCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCA 1300 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 || || | || | || || || ||||||| || |||||||| || || | Sbjct 1299 CGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCACA 1240 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 ||||| ||||| || || || || || ||||| | ||||| || || ||||||||| Sbjct 1239 TTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTTGG 1180 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | || || || ||||||||||||| || || || ||| ||| || ||||| ||||| Sbjct 1179 CTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCAAA 1120 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 ||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| || Sbjct 1119 ACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCTTG 1060 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33836 ||| ||| ||||| ||||||||||||||||| || || ||||| Sbjct 1059 CATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622705426404840