Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_007023.1 Length=180500 Score E Sequences producing significant alignments: (Bits) Value seq2698 113 5e-20 seq1262 95.1 1e-14 >seq2698 Length=11445 Score = 113 bits (124), Expect = 5e-20 Identities = 136/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 51908 CCGACTGTTAAAGTTGAAGGTGGACAGCACCTAAACGTGAATGTGCTACGTCGCGAAACC 51967 || ||||| | ||||||||||||||| || |||| || || || || || ||||| Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368 Query 51968 CTGGAAGATGCTGTGAAACATCCTGAGAAGTACCCACAGTTAACGATCCGCGTTTCAGGT 52027 || ||||| || |||||||||| || ||||| |||||||| || | |||||||| Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428 Query 52028 TATGCAGTTCGCTTTAATGCACTGACTCCAGAACAACAGCGCGACGTTATCGCCAGAACC 52087 ||||| ||| | ||||| | | || || |||||||| | || ||||| ||||||| Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488 Query 52088 TTTAC 52092 || || Sbjct 5489 TTCAC 5493 >seq1262 Length=72559 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 96429 TCCTTAAAACGTTCTTTTCCAGTGCCATTGCATGAACTGCATTTTGGCGATCCGTGGTTA 96488 || ||| | |||||||||||||| ||||| || ||||| |||||||| || | || | Sbjct 18 TCTTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTG 77 Query 96489 TCATACCGACCCGAACCGTTACATGCAAGACATTTCCGTAATTTCCAACCATACACGAAC 96548 ||||||| || ||||||||||| |||| |||||| | ||||| | ||||| | || Sbjct 78 TCATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATATTCAAAT 137 Query 96549 CGCATATAGTAATCGGTTCGTGCGGCTTTGCGTTCGTGGAAGTTCATACTTT 96600 | ||| | | |||| | | |||| | ||| || || ||||| |||| Sbjct 138 TTAAAATAATGGTTCGTTCTTTCTTCTTTTCTTTCATGAAAATTCATGCTTT 189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577247875898400