Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq4853 183 8e-41 seq2021 161 3e-34 >seq4853 Length=2014 Score = 183 bits (202), Expect = 8e-41 Identities = 688/1070 (64%), Gaps = 33/1070 (3%) Strand=Plus/Minus Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489 |||||||| || ||||| || || || || ||| | | |||||||| ||| | || || Sbjct 1369 ATCAATGGGGAAATTGTCGAGCGTCCTCAACATCTACTGATGCGTGTGGCTGTGGGCATA 1310 Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547 || || |||| | ||||| || || ||||| || || | ||| || || | | | | Sbjct 1309 CACGGCGAGGATATCGATGCGGCCATAGAAACCTACAATTTACTATCAGAGCGC-TATTT 1251 Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607 | || |||||| | || || | | | ||| | || | ||||| |||| || | Sbjct 1250 T-ACTCACGCCTCTCCCACGCTATTCGCTGCAGCCACAAGACGCCCACAACTGTCCTCCT 1192 Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667 | || || || | ||| | || |||||||||||||| || | | | || | | Sbjct 1191 GTTTCCTGCTCACTATGGTTGCTGACTCCATCGAGGGTATTTTCAAGTCCGTAGAGCAAT 1132 Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC 363725 | || | || |||||| |||||||| ||||| | || || || | || || Sbjct 1131 GCGCCATGATCTCCAAGTCCGCAGGCGGCATTGGCCTGA--ATGTGCATTGCATACGCGC 1074 Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785 | || |||| ||||| || ||| ||||| | || || ||||| || Sbjct 1073 CAAAGGCACGGGCATTGCTGGCACGAATGGCACCTCTAATGGTTTAGTGCCTATGCTGCG 1014 Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845 |||||| | || ||| | ||||| || ||||| || || || || ||| || || Sbjct 1013 TGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGTCCAGGTGCCTT 954 Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905 || || ||| | || || || | ||||| ||||||||| | || | |||||| Sbjct 953 CGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTGAAGAAAAA 894 Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965 || || || || || | |||||||| ||| | |||||||| || ||| | | ||| Sbjct 893 TACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTT 834 Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025 || ||||| || |||||||||| | ||||||||||| | ||||||||| | || || Sbjct 833 GTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAAGTGCCC 774 Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085 || || || || |||||||| || | | || || || || ||||| | Sbjct 773 CGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGA----GC 718 Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAG---AAGC--------TATGGTTTGCCATC 364134 | ||| | |||| | |||| ||||| | |||| | ||||||||||| Sbjct 717 GTGAA--GGTCGT--GCCAAT---CGCACTGTTAAAGCTCAAACCTTGTGGTTTGCCATT 665 Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194 || || | || | || || || || || |||||| | || || ||| | || || ||| Sbjct 664 ATAGAGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGC 605 Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254 ||| || || ||| | || || || || || ||||| |||| || || ||| | Sbjct 604 AAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTA 545 Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314 ||||| | || || || || | ||| || ||||| | || || || || || | Sbjct 544 GAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATG 485 Query 364315 TTTGTAAA---AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371 ||||| || ||| |||| ||| | | || | || || | | || Sbjct 484 TTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTA 425 Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431 || | ||| | |||| | || |||| ||||| || || | || || ||| ||||| Sbjct 424 ACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGCCAAGCGT 365 Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481 || |||||||||||||| || || ||| |||| ||||| || |||| || Sbjct 364 TCAAATATGCGTCATCGTCCCATAGGTATTGGAGTACAAGGATTCGCAGA 315 >seq2021 Length=2943 Score = 161 bits (178), Expect = 3e-34 Identities = 472/724 (65%), Gaps = 25/724 (3%) Strand=Plus/Plus Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831 || || ||||| |||||||| | || ||| | ||||| || ||||| || || || Sbjct 685 GTGCCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAA 744 Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891 || ||| || || || || ||| | || || || | ||||| ||||||||| | Sbjct 745 CGTCCAGGCGCCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTG 804 Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951 || | |||||| || || || || || | |||||||| ||| | || ||||| || Sbjct 805 GATTTGAAGAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTTTATGCTCTA 864 Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011 ||| | | ||| || ||||| || |||||||||| | ||||||||||| | ||| Sbjct 865 TGGATACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGC 924 Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAA 364071 |||||| | || || || || || || |||||||| || | | || || || Sbjct 925 CCACACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAG 984 Query 364072 AAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG---AAGC-------- 364120 || ||||| | | ||| | |||| | |||| ||||| | |||| Sbjct 985 AAATATGA----GCGTGAA--GGTCGT--GCCAAT---CGCACTGTTAAAGCTCAAACCT 1033 Query 364121 TATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAG 364180 | ||||||||||| || || | ||| | || || || || || |||||| | || || | Sbjct 1034 TGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGG 1093 Query 364181 ATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTAT 364240 || | || || |||||| || || ||| | || || || || || ||||| ||| Sbjct 1094 ATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTAT 1153 Query 364241 GTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGA 364300 | || || ||| | ||||| | || || || || | ||| || ||||| | || || | Sbjct 1154 GCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAA 1213 Query 364301 TCGCGCTTCCGGCGTTTGTAAA---AGATGGTACTTTTGACCACCAGCATCTTTATGACG 364357 | || || |||||| || ||| |||| ||| | | || | || | Sbjct 1214 TTGCACTCAATATGTTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAG 1273 Query 364358 TAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTC 364417 | | | || || | ||| | |||| | || |||| ||||| || || | | Sbjct 1274 TTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGC 1333 Query 364418 CTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCG 364477 | || ||| ||||||| |||||||||||||| || || ||| |||| ||||| || ||| Sbjct 1334 CGGAGGCCAAGCGTTCAAATATGCGTCATCGTCCCATAGGTATTGGCGTACAAGGATTCG 1393 Query 364478 CTGA 364481 | || Sbjct 1394 CAGA 1397 Score = 86.0 bits (94), Expect = 2e-11 Identities = 122/169 (72%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAAC-TCTCATTGATATGGCGGCCGATCGCGG 365048 ||||| || || ||||| ||||| | || ||| ||| | ||||| || ||||| || Sbjct 1929 TACAAGACAGTTTGGGAGATTTCTGTTAAGACGTCT-ATTAAAATGGCAGCTGATCGTGG 1987 Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108 ||||||||| ||| || || ||||||||| || || || |||| | | | || Sbjct 1988 TGCTTTTATAGATCAAAGTCAATCGTTTAACATACATGTGGCTGAGCCGAATTATGGTAA 2047 Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157 || |||||||| ||||||||||| |||||| | || | ||||| ||| Sbjct 2048 ACTGACATCCATACATTTCTACGGTTGGAAAGCAGGCTTGAAGACCGGT 2096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302835105980318