Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 183 8e-41
seq2021 161 3e-34
>seq4853
Length=2014
Score = 183 bits (202), Expect = 8e-41
Identities = 688/1070 (64%), Gaps = 33/1070 (3%)
Strand=Plus/Minus
Query 363430 ATCAATGGTGATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATC 363489
|||||||| || ||||| || || || || ||| | | |||||||| ||| | || ||
Sbjct 1369 ATCAATGGGGAAATTGTCGAGCGTCCTCAACATCTACTGATGCGTGTGGCTGTGGGCATA 1310
Query 363490 CATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAGCTTCTA--AGTGCTCGTGTAT 363547
|| || |||| | ||||| || || ||||| || || | ||| || || | | | |
Sbjct 1309 CACGGCGAGGATATCGATGCGGCCATAGAAACCTACAATTTACTATCAGAGCGC-TATTT 1251
Query 363548 TCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTT 363607
| || |||||| | || || | | | ||| | || | ||||| |||| || |
Sbjct 1250 T-ACTCACGCCTCTCCCACGCTATTCGCTGCAGCCACAAGACGCCCACAACTGTCCTCCT 1192
Query 363608 GCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATT 363667
| || || || | ||| | || |||||||||||||| || | | | || | |
Sbjct 1191 GTTTCCTGCTCACTATGGTTGCTGACTCCATCGAGGGTATTTTCAAGTCCGTAGAGCAAT 1132
Query 363668 GTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATG--TTCGTGC 363725
| || | || |||||| |||||||| ||||| | || || || | || ||
Sbjct 1131 GCGCCATGATCTCCAAGTCCGCAGGCGGCATTGGCCTGA--ATGTGCATTGCATACGCGC 1074
Query 363726 ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCG 363785
| || |||| ||||| || ||| ||||| | || || ||||| ||
Sbjct 1073 CAAAGGCACGGGCATTGCTGGCACGAATGGCACCTCTAATGGTTTAGTGCCTATGCTGCG 1014
Query 363786 TGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTT 363845
|||||| | || ||| | ||||| || ||||| || || || || ||| || ||
Sbjct 1013 TGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGTCCAGGTGCCTT 954
Query 363846 TGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAA 363905
|| || ||| | || || || | ||||| ||||||||| | || | ||||||
Sbjct 953 CGCCATCTATTTGGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTGAAGAAAAA 894
Query 363906 CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCA 363965
|| || || || || | |||||||| ||| | |||||||| || ||| | | |||
Sbjct 893 TACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTT 834
Query 363966 TTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCC 364025
|| ||||| || |||||||||| | ||||||||||| | ||||||||| | || ||
Sbjct 833 GTTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAAGTGCCC 774
Query 364026 AGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGA 364085
|| || || || |||||||| || | | || || || || ||||| |
Sbjct 773 CGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGA----GC 718
Query 364086 GGGAAAGGCTCGTAAGACAATTCCCGCACAG---AAGC--------TATGGTTTGCCATC 364134
| ||| | |||| | |||| ||||| | |||| | |||||||||||
Sbjct 717 GTGAA--GGTCGT--GCCAAT---CGCACTGTTAAAGCTCAAACCTTGTGGTTTGCCATT 665
Query 364135 ATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGC 364194
|| || | || | || || || || || |||||| | || || ||| | || || |||
Sbjct 664 ATAGAGGCTCAAGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGC 605
Query 364195 AAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATT 364254
||| || || ||| | || || || || || ||||| |||| || || ||| |
Sbjct 604 AAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTA 545
Query 364255 GAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCG 364314
||||| | || || || || | ||| || ||||| | || || || || || |
Sbjct 544 GAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATG 485
Query 364315 TTTGTAAA---AGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCT 364371
||||| || ||| |||| ||| | | || | || || | | ||
Sbjct 484 TTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTA 425
Query 364372 ACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGT 364431
|| | ||| | |||| | || |||| ||||| || || | || || ||| |||||
Sbjct 424 ACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGCCAAGCGT 365
Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGA 364481
|| |||||||||||||| || || ||| |||| ||||| || |||| ||
Sbjct 364 TCAAATATGCGTCATCGTCCCATAGGTATTGGAGTACAAGGATTCGCAGA 315
>seq2021
Length=2943
Score = 161 bits (178), Expect = 3e-34
Identities = 472/724 (65%), Gaps = 25/724 (3%)
Strand=Plus/Plus
Query 363772 GTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAG 363831
|| || ||||| |||||||| | || ||| | ||||| || ||||| || || ||
Sbjct 685 GTGCCTATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAA 744
Query 363832 CGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTT 363891
|| ||| || || || || ||| | || || || | ||||| ||||||||| |
Sbjct 745 CGTCCAGGCGCCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTG 804
Query 363892 GAGCTCCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTT 363951
|| | |||||| || || || || || | |||||||| ||| | || ||||| ||
Sbjct 805 GATTTGAAGAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTTTATGCTCTA 864
Query 363952 TGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGC 364011
||| | | ||| || ||||| || |||||||||| | ||||||||||| | |||
Sbjct 865 TGGATACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGC 924
Query 364012 CCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAA 364071
|||||| | || || || || || || |||||||| || | | || || ||
Sbjct 925 CCACACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAG 984
Query 364072 AAGTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAG---AAGC-------- 364120
|| ||||| | | ||| | |||| | |||| ||||| | ||||
Sbjct 985 AAATATGA----GCGTGAA--GGTCGT--GCCAAT---CGCACTGTTAAAGCTCAAACCT 1033
Query 364121 TATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAG 364180
| ||||||||||| || || | ||| | || || || || || |||||| | || || |
Sbjct 1034 TGTGGTTTGCCATTATAGAGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGG 1093
Query 364181 ATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTAT 364240
|| | || || |||||| || || ||| | || || || || || ||||| |||
Sbjct 1094 ATGCTTGTAATCGCAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTAT 1153
Query 364241 GTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGA 364300
| || || ||| | ||||| | || || || || | ||| || ||||| | || || |
Sbjct 1154 GCACTGAAATTGTAGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAA 1213
Query 364301 TCGCGCTTCCGGCGTTTGTAAA---AGATGGTACTTTTGACCACCAGCATCTTTATGACG 364357
| || || |||||| || ||| |||| ||| | | || | || |
Sbjct 1214 TTGCACTCAATATGTTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAG 1273
Query 364358 TAACCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTC 364417
| | | || || | ||| | |||| | || |||| ||||| || || | |
Sbjct 1274 TTGCTAAAATTGTAACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGC 1333
Query 364418 CTGAAGCCGAGCGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCG 364477
| || ||| ||||||| |||||||||||||| || || ||| |||| ||||| || |||
Sbjct 1334 CGGAGGCCAAGCGTTCAAATATGCGTCATCGTCCCATAGGTATTGGCGTACAAGGATTCG 1393
Query 364478 CTGA 364481
| ||
Sbjct 1394 CAGA 1397
Score = 86.0 bits (94), Expect = 2e-11
Identities = 122/169 (72%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 364990 TACAAAACCGTATGGGAAATTTCCATGCGAAC-TCTCATTGATATGGCGGCCGATCGCGG 365048
||||| || || ||||| ||||| | || ||| ||| | ||||| || ||||| ||
Sbjct 1929 TACAAGACAGTTTGGGAGATTTCTGTTAAGACGTCT-ATTAAAATGGCAGCTGATCGTGG 1987
Query 365049 TGCTTTTATCTGTCAGAGCCAGTCGTTTAACGTATTCATGACTCAGCCAACCTCCGCCAA 365108
||||||||| ||| || || ||||||||| || || || |||| | | | ||
Sbjct 1988 TGCTTTTATAGATCAAAGTCAATCGTTTAACATACATGTGGCTGAGCCGAATTATGGTAA 2047
Query 365109 GCTTACATCCATGCATTTCTACGGGTGGAAATCCGGTCTTAAGACAGGT 365157
|| |||||||| ||||||||||| |||||| | || | ||||| |||
Sbjct 2048 ACTGACATCCATACATTTCTACGGTTGGAAAGCAGGCTTGAAGACCGGT 2096
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1302835105980318
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |