Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq2021 102 7e-17 seq4853 87.8 2e-12 >seq2021 Length=2943 Score = 102 bits (112), Expect = 7e-17 Identities = 711/1139 (62%), Gaps = 64/1139 (6%) Strand=Plus/Minus Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258 ||| ||||| || | || ||||||| || || || | ||| || | |||| ||| Sbjct 1811 ATGATGATTCACCACCTGGAATTCACCAGACAATACACGACGTGTATAGATATTAGAAGT 1752 Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318 | | ||||| || ||||| || || |||| ||||| || || | ||||| ||||| Sbjct 1751 ATAAGGCTCAAAAGATTCATTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGG 1692 Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCA 132378 ||||| | || ||||| |||| || ||| | || |||| | || ||||| |||| Sbjct 1691 TGCAATAAGCAAAGAATTACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCA 1632 Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACT 132438 ||||| |||||| | | | | | | ||||| |||| |||||||| || | || Sbjct 1631 ATTCCATAGATCAGTAGGT---GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCT 1575 Query 132439 TGCAGGAGATCCGTTATAAGAATCGTA--TGCTCC-------GTGTAATTTGG---CAAG 132486 |||| || || ||||| || || || || || | || || || Sbjct 1574 GACAGGCGAGCCCGCATAAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGC 1515 Query 132487 TTCTATGCT---------CTGACT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTT 132535 |||| || ||| || || ||||||||||||||| || || | |||| | Sbjct 1514 TTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGT 1455 Query 132536 CTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAATTTAAAATAGCGAACGCATCG 132595 ||| | | ||||| | ||| || || || || | | || ||||| Sbjct 1454 TGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCT 1395 Query 132596 GCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATA-CTTGTGCGCT 132654 || | ||| || | ||| ||||| ||||| | ||| | ||| || |||| | | Sbjct 1394 GCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCC 1335 Query 132655 AGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGC 132714 | |||||| || | || ||||||| ||||| || | ||| || |||| | |||| Sbjct 1334 GG-CAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGC 1276 Query 132715 CACTTTATATAGCGATTCAAAGTCA-AAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGA 132773 |||| | || || ||| ||| |||| || ||| | |||| |||| ||||| Sbjct 1275 AACTTCTTTGAGTTTTTTAAAATCATAAGTCTT--GTC--TGGGTTGACAAACATATTGA 1220 Query 132774 CGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTT 132833 ||||| ||||| ||||| || || || | || | | ||| | ||| |||| Sbjct 1219 GTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTT 1160 Query 132834 CTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTA 132893 | | || ||||| ||| ||| || | || | |||||| | || || ||| Sbjct 1159 CAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTG-CGATTA 1101 Query 132894 CGTT-ATCTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTT 132952 | ||| |||| | ||| || ||| || ||||| |||||| || ||||| Sbjct 1100 CAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGG-- 1043 Query 132953 CTGTGAAGATCTAACGCCAAAATTTGTTCTTTAAACTTGC------------CCTGAGTC 133000 | ||| ||| |||| |||||| ||| | | | | Sbjct 1042 ----------CAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGC 993 Query 133001 TCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACAC 133060 || || | || || | | |||| |||||||| || | || | | ||||| ||| Sbjct 992 TCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCAC 933 Query 133061 TCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAA 133120 | || || ||||| | |||||| | | |||| ||| | ||||||||| || Sbjct 932 TTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCG 873 Query 133121 GGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATA-TCTTCCGCGCCCATATTTCG 133179 ||| |||| | ||| |||||||||| || || ||| |||||| ||| ||||| Sbjct 872 GGTATCCATAGAGCATAAAATAAATCTCGTGCACG-ATACTCTTCCTTGCCAGTATTTTT 814 Query 133180 TTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGC 133239 ||||| |||||||| ||| || || | ||||| || || | ||| | ||| || || Sbjct 813 CTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGC 754 Query 133240 GCCTTTCCTTTTACC---TCCCTGATCCACATGTCTAAGCATGCTGTTGAAGACACGCA 133295 |||| | ||| || |||||||||||| | | || | | ||||| ||||||| Sbjct 753 GCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCA 695 >seq4853 Length=2014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 170/248 (69%), Gaps = 5/248 (2%) Strand=Plus/Plus Query 133052 CCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATG 133111 ||||| |||| || || ||||| | |||||| | | |||| ||| | ||||||| Sbjct 771 CCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATG 830 Query 133112 AACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATA-TCTTCCGCGCC 133170 ||||| ||| |||||| ||| | |||||||| || | | ||| |||||| ||| Sbjct 831 AACAAGTCGGGTATCCACAGAGCATAGAATAAATCTCGTG-CACGATACTCTTCCTTGCC 889 Query 133171 CATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATAC 133230 ||||| ||||| |||||||| ||| || || | ||||| || || | ||| | Sbjct 890 AGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGAT 949 Query 133231 GGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACATGTCTAAGCATGCTGTTGAA 133287 ||| || || ||| | ||| |||||||||||||| | | || | | ||||| Sbjct 950 GGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAA 1009 Query 133288 GACACGCA 133295 ||||||| Sbjct 1010 CACACGCA 1017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429773308052595