Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_007383.1
Length=134394
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 102 7e-17
seq4853 87.8 2e-12
>seq2021
Length=2943
Score = 102 bits (112), Expect = 7e-17
Identities = 711/1139 (62%), Gaps = 64/1139 (6%)
Strand=Plus/Minus
Query 132199 ATGTTGATTTACTATTTGATATTCACCCGATAAGACTCTTCGTACGTACAAATTACTAGT 132258
||| ||||| || | || ||||||| || || || | ||| || | |||| |||
Sbjct 1811 ATGATGATTCACCACCTGGAATTCACCAGACAATACACGACGTGTATAGATATTAGAAGT 1752
Query 132259 AAACGGCTCGAACGATTCGTTGTTTCCCAATATTTGAGCTGTCGTTGCCGTCGGCATGTA 132318
| | ||||| || ||||| || || |||| ||||| || || | ||||| |||||
Sbjct 1751 ATAAGGCTCAAAAGATTCATTATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGG 1692
Query 132319 GGCAATCAATAATGAATTGCGCAGCCCGTGTATGGCCATTTGCCGTTTAAGCTCGTCCCA 132378
||||| | || ||||| |||| || ||| | || |||| | || ||||| ||||
Sbjct 1691 TGCAATAAGCAAAGAATTACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCA 1632
Query 132379 GTTCCACAGATCATTCGATTGAGAGATATTCCACAAATCAAACTGTAAATGACCGCTACT 132438
||||| |||||| | | | | | | ||||| |||| |||||||| || | ||
Sbjct 1631 ATTCCATAGATCAGTAGGT---GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCT 1575
Query 132439 TGCAGGAGATCCGTTATAAGAATCGTA--TGCTCC-------GTGTAATTTGG---CAAG 132486
|||| || || ||||| || || || || || | || || ||
Sbjct 1574 GACAGGCGAGCCCGCATAAGTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGC 1515
Query 132487 TTCTATGCT---------CTGACT--CAGGGCACCATAATAAATAGTCTCTGAGATTTTT 132535
|||| || ||| || || ||||||||||||||| || || | |||| |
Sbjct 1514 TTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGT 1455
Query 132536 CTATTCAATTCCCTTGCTTGTTGACTGTCGTAGGGCAAATTTAAAATAGCGAACGCATCG 132595
||| | | ||||| | ||| || || || || | | || |||||
Sbjct 1454 TGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCT 1395
Query 132596 GCAAGTCCCTGAATGCCGATACCGATGGGTCTATGTTTAAAATTCGATA-CTTGTGCGCT 132654
|| | ||| || | ||| ||||| ||||| | ||| | ||| || |||| | |
Sbjct 1394 GCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCC 1335
Query 132655 AGTCAGCGGATAAAAGTTTTTGTCTATTATTTTATTGAGATTGTTAGTGACAACTCTAGC 132714
| |||||| || | || ||||||| ||||| || | ||| || |||| | ||||
Sbjct 1334 GG-CAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATTTTAGC 1276
Query 132715 CACTTTATATAGCGATTCAAAGTCA-AAGTTTTTAGTCCTTTTGTTGGCAAAACAATTGA 132773
|||| | || || ||| ||| |||| || ||| | |||| |||| |||||
Sbjct 1275 AACTTCTTTGAGTTTTTTAAAATCATAAGTCTT--GTC--TGGGTTGACAAACATATTGA 1220
Query 132774 CGGCAATCGAGGCCAAATTGCATACGGCTGTCTCTTTATTATCGCTATACTGTACGATTT 132833
||||| ||||| ||||| || || || | || | | ||| | ||| ||||
Sbjct 1219 GTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTT 1160
Query 132834 CTGCACACAAATTACTGTTTCGAATAACTCCCAAGtttttttGATTGTTTTTCTCGTTTA 132893
| | || ||||| ||| ||| || | || | |||||| | || || |||
Sbjct 1159 CAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTG-CGATTA 1101
Query 132894 CGTT-ATCTTTATGCAACATGTACGGACCTCCGGTTTCGACCTGAATTTCGATAATTTTT 132952
| ||| |||| | ||| || ||| || ||||| |||||| || |||||
Sbjct 1100 CAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGG-- 1043
Query 132953 CTGTGAAGATCTAACGCCAAAATTTGTTCTTTAAACTTGC------------CCTGAGTC 133000
| ||| ||| |||| |||||| ||| | | | |
Sbjct 1042 ----------CAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTTCACGC 993
Query 133001 TCGTAACTTTCGTATAATCGCTCAAATTCTTCGCCATAGCAGTCGTTCAAACCGGGACAC 133060
|| || | || || | | |||| |||||||| || | || | | ||||| |||
Sbjct 992 TCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCAC 933
Query 133061 TCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATGAACAACGAA 133120
| || || ||||| | |||||| | | |||| ||| | ||||||||| ||
Sbjct 932 TTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCG 873
Query 133121 GGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATA-TCTTCCGCGCCCATATTTCG 133179
||| |||| | ||| |||||||||| || || ||| |||||| ||| |||||
Sbjct 872 GGTATCCATAGAGCATAAAATAAATCTCGTGCACG-ATACTCTTCCTTGCCAGTATTTTT 814
Query 133180 TTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATACGGCCAAAGC 133239
||||| |||||||| ||| || || | ||||| || || | ||| | ||| || ||
Sbjct 813 CTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGC 754
Query 133240 GCCTTTCCTTTTACC---TCCCTGATCCACATGTCTAAGCATGCTGTTGAAGACACGCA 133295
|||| | ||| || |||||||||||| | | || | | ||||| |||||||
Sbjct 753 GCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCA 695
>seq4853
Length=2014
Score = 87.8 bits (96), Expect = 2e-12
Identities = 170/248 (69%), Gaps = 5/248 (2%)
Strand=Plus/Plus
Query 133052 CCGGGACACTCGTCAGGACACATCAATGACCATTTTTCTCCTGCGCTCACCCTTTTCATG 133111
||||| |||| || || ||||| | |||||| | | |||| ||| | |||||||
Sbjct 771 CCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATG 830
Query 133112 AACAACGAAGGTGTCCACATGGCAAAAAATAAATCGCGAGCCTTCATA-TCTTCCGCGCC 133170
||||| ||| |||||| ||| | |||||||| || | | ||| |||||| |||
Sbjct 831 AACAAGTCGGGTATCCACAGAGCATAGAATAAATCTCGTG-CACGATACTCTTCCTTGCC 889
Query 133171 CATATTTCGTTTCAAGTCCaaaaaagtaaaaaTGTCTGCATGCCAAGGCTCGATATATAC 133230
||||| ||||| |||||||| ||| || || | ||||| || || | ||| |
Sbjct 890 AGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGAT 949
Query 133231 GGCCAAAGCGCCTTTCCTTTT---ACCTCCCTGATCCACATGTCTAAGCATGCTGTTGAA 133287
||| || || ||| | ||| |||||||||||||| | | || | | |||||
Sbjct 950 GGCGAAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAA 1009
Query 133288 GACACGCA 133295
|||||||
Sbjct 1010 CACACGCA 1017
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429773308052595
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |