Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_007804.2
Length=39104
Score E
Sequences producing significant alignments: (Bits) Value
seq9716 127 5e-25
seq4088 89.7 1e-13
seq17421 87.8 4e-13
>seq9716
Length=2276
Score = 127 bits (140), Expect = 5e-25
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 1789 TTCATCGACTTCGGTTACGGAACTGGTCTGAAGTCAATCGGTGACGGCTGGGGTCGTACA 1848
|||||||| | ||| || || || || ||||||||| | || || |||||| || |
Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785
Query 1849 TGGCAACTTGTTCCGTTCGGTGGCGCGTCTACTGACCCGCAGATGCTCAACAAGCGTGGG 1908
||||| || | | ||||||| ||| ||||| || ||||||||| |||||||||||
Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845
Query 1909 GAGATGTTCAACTCATGCAAGACATGGCTGAGGCTGGGCGGGATGCTGGATGACCAGGAA 1968
||||||| |||| | ||||| ||||||| | |||||| ||||||| |||||
Sbjct 846 GAGATGTACAACGCGGTTAAGACCTGGCTGAAGGATGGCGGGCAGCTGGATAGTCAGGAT 905
Query 1969 ACAGCGGACGACCTGTCGACGGCAGAGTACAAAGTTCG 2006
|| || || ||||| ||||||| ||||| || ||
Sbjct 906 GTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCG 943
Score = 118 bits (130), Expect = 3e-22
Identities = 104/130 (80%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 1129 GCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGACGCAATCCCCTGG 1188
|| || ||||||||||| | | |||| ||| ||||| ||||| || ||||| |||
Sbjct 3 GCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCATGG 62
Query 1189 TCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCATCATCGTG 1248
|| ||| ||||||| ||||| |||||||| || ||||||||||| || ||||||||| ||
Sbjct 63 TCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCCTG 122
Query 1249 GTATTCGACG 1258
|||||||||
Sbjct 123 ATATTCGACG 132
>seq4088
Length=5036
Score = 89.7 bits (98), Expect = 1e-13
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 2850 TTCTGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTG 2909
|| ||| | | | ||| ||| ||||||| |||||| |||||||||||||||||||||||
Sbjct 4327 TTTTGGTGCGCCGTGCTGGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTA 4268
Query 2910 TCCAACTGAGCTAA 2923
||||||||||||||
Sbjct 4267 TCCAACTGAGCTAA 4254
>seq17421
Length=2767
Score = 87.8 bits (96), Expect = 4e-13
Identities = 56/61 (92%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 2863 TGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922
||| ||||| ||||| |||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 2557 TGCTGGATTTGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2616
Query 2923 A 2923
|
Sbjct 2617 A 2617
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 124965107511108
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |