Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_007804.2 Length=39104 Score E Sequences producing significant alignments: (Bits) Value seq9716 127 5e-25 seq4088 89.7 1e-13 seq17421 87.8 4e-13 >seq9716 Length=2276 Score = 127 bits (140), Expect = 5e-25 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 1789 TTCATCGACTTCGGTTACGGAACTGGTCTGAAGTCAATCGGTGACGGCTGGGGTCGTACA 1848 |||||||| | ||| || || || || ||||||||| | || || |||||| || | Sbjct 726 TTCATCGATTACGGGTATGGCACCGGCCTGAAGTCAGTAGGCGATAACTGGGGCCGAAAC 785 Query 1849 TGGCAACTTGTTCCGTTCGGTGGCGCGTCTACTGACCCGCAGATGCTCAACAAGCGTGGG 1908 ||||| || | | ||||||| ||| ||||| || ||||||||| ||||||||||| Sbjct 786 TGGCAGCTGATACAGTTCGGTAGCGGCTCTACCGATCCGCAGATGGCGAACAAGCGTGGC 845 Query 1909 GAGATGTTCAACTCATGCAAGACATGGCTGAGGCTGGGCGGGATGCTGGATGACCAGGAA 1968 ||||||| |||| | ||||| ||||||| | |||||| ||||||| ||||| Sbjct 846 GAGATGTACAACGCGGTTAAGACCTGGCTGAAGGATGGCGGGCAGCTGGATAGTCAGGAT 905 Query 1969 ACAGCGGACGACCTGTCGACGGCAGAGTACAAAGTTCG 2006 || || || ||||| ||||||| ||||| || || Sbjct 906 GTTGCAGATGAGCTGTCAGCGGCAGAATACAAGGTCCG 943 Score = 118 bits (130), Expect = 3e-22 Identities = 104/130 (80%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 1129 GCGATGTACAGCAATGACCCTGGGCACGACAAGCGGTGGCGAGCTGACGCAATCCCCTGG 1188 || || ||||||||||| | | |||| ||| ||||| ||||| || ||||| ||| Sbjct 3 GCCATTTACAGCAATGATGCCGCACACGCTAAGTCATGGCGCGCTGATGCCATCCCATGG 62 Query 1189 TCTGAGCACAACACTGAGGCATTCGCCGGACTACACAACGAGCGCAAACGCATCATCGTG 1248 || ||| ||||||| ||||| |||||||| || ||||||||||| || ||||||||| || Sbjct 63 TCAGAGAACAACACCGAGGCGTTCGCCGGCCTGCACAACGAGCGAAAGCGCATCATCCTG 122 Query 1249 GTATTCGACG 1258 ||||||||| Sbjct 123 ATATTCGACG 132 >seq4088 Length=5036 Score = 89.7 bits (98), Expect = 1e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 2850 TTCTGGCGTGGCATGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTG 2909 || ||| | | | ||| ||| ||||||| |||||| ||||||||||||||||||||||| Sbjct 4327 TTTTGGTGCGCCGTGCTGGACTCGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTA 4268 Query 2910 TCCAACTGAGCTAA 2923 |||||||||||||| Sbjct 4267 TCCAACTGAGCTAA 4254 >seq17421 Length=2767 Score = 87.8 bits (96), Expect = 4e-13 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 2863 TGCAGGATTCGAACCTGCGACCAACCGCTTAGAAGGCGGTTGCTCTGTCCAACTGAGCTA 2922 ||| ||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 2557 TGCTGGATTTGAACCAGCGACCTACCGCTTAGAAGGCGGTTGCTCTATCCAACTGAGCTA 2616 Query 2923 A 2923 | Sbjct 2617 A 2617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 124965107511108