Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq4853 150 2e-31 seq2021 150 2e-31 seq26883 95.1 1e-14 >seq4853 Length=2014 Score = 150 bits (166), Expect = 2e-31 Identities = 725/1139 (64%), Gaps = 18/1139 (2%) Strand=Plus/Plus Query 145130 TTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTG 145189 |||||||||| |||||| || || | || || ||||| || | | || ||||| Sbjct 3 TTATTGCCCATGATTTGTGCAGTGGAGGCTGTAGGCATTGGTGCAATGAGCAAAGAATTA 62 Query 145190 CGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGC 145249 |||| ||| || || || | ||||| ||| |||||| |||||| ||| || Sbjct 63 CGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGT 122 Query 145250 CTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAA 145309 | | |||||| || ||||| ||||| |||| |||| | || ||| | | | Sbjct 123 GTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTT 182 Query 145310 CTGTAACTGCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAAT 145368 || | |||| || | || | ||| || || || |||| || || ||||||| Sbjct 183 TCATAGG-GACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAAT 241 Query 145369 TGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAG 145428 || || ||||| || ||| | ||||| || || || || || |||| Sbjct 242 CGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCAT 301 Query 145429 CAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTT 145488 |||| || ||||| |||| || |||| ||| | || ||||| ||||| ||| || Sbjct 302 GAGTATCAATGCATCTGCGAATCCTTGTACTCCAATACCTATGGGACGATGACGCATATT 361 Query 145489 GCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGTTTCG 145548 | | ||| | | || || ||| ||| || ||||| ||||| || || Sbjct 362 TGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACG 421 Query 145549 CACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAACGAC 145608 ||| | || | || | | |||| ||| ||| | || || ||| | Sbjct 422 TGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATA---AGTCTTGTCTGGGTT 478 Query 145609 CACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCGTCGC 145667 ||| | |||||| || || || || ||||||||||| || | || | ||| | || Sbjct 479 GACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCG- 537 Query 145668 TGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGAT 145727 |||| ||| || || | ||| |||||||| || ||||| || || ||||| || |||| Sbjct 538 AATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGAT 597 Query 145728 TACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCG 145787 |||| || | || || || ||||| |||||||| || || |||||| ||||| || | Sbjct 598 TACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAG 657 Query 145788 TCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCAC-CTGCTGCTGGTAGCGGCCCT 145844 ||| | || |||| |||| || || || ||| ||| | || || | Sbjct 658 CCTCTATAATGGCAAAC--CACAAGGTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTT 714 Query 145845 CTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGG 145904 | || |||||| || || | ||| || | ||| | || || |||| Sbjct 715 CACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGG 774 Query 145905 GACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACA 145964 | ||||||| || ||||| || ||||| |||| | || | || || | ||| |||| Sbjct 775 GGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACA 834 Query 145965 AATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCCATGT 146024 | || || | |||||| || || | || || || || | || || || | | Sbjct 835 AGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTAT 894 Query 146025 TTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCG 146083 || |||||||| || || | | | || |||| |||||| ||||| | ||||| |||| Sbjct 895 TTTTCTTCAAATCCAAAAACTC-AAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCG 953 Query 146084 AGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACG 146140 | ||| ||| ||||| ||| ||||| ||||||| || ||| ||| || || || Sbjct 954 AAGGCACCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACA 1013 Query 146141 CGCACCATGGGCTCGACGCCGCTGGCTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGG 146200 |||| ||| ||| | | || | | ||| ||||| || | ||||| | Sbjct 1014 CGCAGCATAGGCACTAAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTG 1073 Query 146201 GAGCGCACGCAATGAACATTCACGCCGAGACCGCCGCCGTACTTGGATATAGCGGCGCA 146259 | ||| | |||||| ||||||| ||| | ||||| || ||||||| || |||||| Sbjct 1074 GCGCGTATGCAATGCACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCA 1132 >seq2021 Length=2943 Score = 150 bits (166), Expect = 2e-31 Identities = 917/1456 (63%), Gaps = 49/1456 (3%) Strand=Plus/Minus Query 144733 ATGGGCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGT 144792 || ||| |||||||| ||||||||||| ||||| || || || | || | |||| Sbjct 2129 ATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTCTTCAAGCCTGCTTTCCAACC 2070 Query 144793 GTAGTCGTGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGA 144852 |||| ||||| || |||| | | || | ||||| |||||| | || | ||| Sbjct 2069 GTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCAGCCACATGTATGTTAAACGA 2010 Query 144853 TTGGCTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTT 144912 ||| |||||||| || ||||| || || || ||||| | ||| | |||| | | Sbjct 2009 TTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATTTTAAT-AGACGTCTTAACAG 1951 Query 144913 CATT-TCCCAAGCGGTCTTGTACAA---ACGTTTAATGTGGTCCGGAATGCCGTCAATCG 144968 | | |||||| | ||||||||||| ||| | || | ||| || | ||||| Sbjct 1950 AAATCTCCCAAACTGTCTTGTACAAGTCACGCACA---TGCTGCGGTATACGCTCAATAT 1894 Query 144969 CCTGAATCGACCCCTTGTGCGCAAATA-TGGCGTTCCGCATTTCGGACGTGTACAGTTTT 145027 || || || || || | | ||| | | || ||| || | || | Sbjct 1893 TTTGTATGGATCCAC-GTTCAGATATAATATCATTTTTCATATCATCATCCCATAGATCA 1835 Query 145028 AACTTGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACA 145087 | || | |||| || | || | ||||| || ||||| || || || | ||| ||| Sbjct 1834 AGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAATTCACCAGACAATACA 1775 Query 145088 CGACGCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGA 145147 ||||| ||| | ||||| || | || |||||||| || |||||||||| |||||| Sbjct 1774 CGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTATTGCCCATGATTTGT 1715 Query 145148 GCGGTCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTG 145207 || || | || || ||||| || | | || ||||| |||| ||| || || Sbjct 1714 GCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGCACGCCATGTTTAGCA 1655 Query 145208 ATGTCTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCG 145267 || | ||||| ||| |||||| |||||| ||| || | | |||||| || Sbjct 1654 ATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTGTTTTTTGCCACATATCA 1595 Query 145268 TACTGCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGG------AACTG--------T 145313 ||||| ||||| |||| |||| | || ||| | | | || || | Sbjct 1594 TACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTTCATAANTGAGCCCGCAT 1535 Query 145314 AACT--------GCCCCAAGTTTTG-GCGAGCTCGCAACTCGCCTCCAGAGCGCCGAAAT 145364 || | | |||| || | || | ||| || || || |||| || || ||| Sbjct 1534 AAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGCTTCCAAGGCACCATAAT 1475 Query 145365 AAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGTACGGCATGC 145424 |||| || || ||||| || ||| | ||||| || || || || || | Sbjct 1474 AAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTCACTTTCATATGGATAAC 1415 Query 145425 GCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCCGATGTTTCA 145484 ||| |||| || ||||| |||| || |||| || | || ||||| ||||| || Sbjct 1414 GCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACCTATGGGACGATGACGCA 1355 Query 145485 TGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTTTATTCAAGT 145544 | || | | ||| | | || || ||| ||| || ||||| ||||| | Sbjct 1354 TATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTCTATGATTTTGTTCAAAT 1295 Query 145545 TTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAGCCTCGTCAA 145604 | || ||| | || | || | | |||| ||| ||| | || || ||| Sbjct 1294 TACGTGTTACAATTTTAGCAACTTCTTTGAGTTTTTTAAAATCATA---AGTCTTGTCTG 1238 Query 145605 CGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCT-CGGCG 145663 | ||| | |||||| || || || || ||||||||||| || | || | ||| | Sbjct 1237 GGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTG 1178 Query 145664 TCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGC 145723 || |||| ||| || || | ||| |||||||| || ||||| || || ||||| || Sbjct 1177 CCG-AATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGT 1119 Query 145724 TGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACC 145783 |||||||| || | || || || ||||| |||||||| || || |||||| |||||| Sbjct 1118 TGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACC 1059 Query 145784 TGCGTCTCCACGAT--AAAACGGTGCAAGTCCTGCGCACGCAC-CTGCTGCTGGTAGCGG 145840 || | ||| | || |||| |||| || || || ||| ||| | || Sbjct 1058 TGAGCCTCTATAATGGCAAAC--CACAAGGTTTGAGCTTTAACAGTGCGATTGGCA-CGA 1002 Query 145841 CCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGG 145900 || || || |||||| || || | ||| || | ||| | || || Sbjct 1001 CCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGT 942 Query 145901 CCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATA 145960 ||||| ||||||| || ||||| || ||||| |||| | || | || || | ||| Sbjct 941 CCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATG 882 Query 145961 AACAAATCTGGCACCCACAGCGCGTACATCAAGTCGCGCGCTTTGCAATCCTCAGCACCC 146020 || || || || | ||| || || || | || || || || | || || || Sbjct 881 AATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCA 822 Query 146021 ATGTTTCGCTTCAAAT-TAAGCACACTATAGATGTCCGCGTGCCACGGTTCAATATAGAC 146079 | ||| |||||||| || || | | | || |||| |||||| ||||| | ||||| Sbjct 821 GTATTTTTCTTCAAATCCAAAAACTC-AAATATATCCGAGTGCCAGGGTTCTAAATAGAT 763 Query 146080 GGCGAGGGCTCCTTTTCGTTT---GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAA 146136 ||||| ||| ||| ||||| ||| ||||| ||||||| || ||| ||| || || Sbjct 762 GGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAA 703 Query 146137 GACGCGCACCATGGGC 146152 || |||| ||| ||| Sbjct 702 CACACGCAGCATAGGC 687 >seq26883 Length=1584 Score = 95.1 bits (104), Expect = 1e-14 Identities = 94/122 (77%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| ||||| | || |||||||||||||||||||||||| | Sbjct 684 CCACCACGAAGACGCAACACCAAATGCAATGTAGACTCCTTTTGAATGTTGTAATCGGCC 625 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| | |||||||| ||| | || |||||||| ||||| || || Sbjct 624 AATGTGCGGCCATCCTCCAATTGCTTGCCAGCGAAAATCAAACGCTGTTGGTCTGGGGGA 565 Query 131128 AT 131129 || Sbjct 564 AT 563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471829605932160