Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq14521 147 1e-30 seq13293 141 6e-29 seq4718 132 3e-26 >seq14521 Length=2880 Score = 147 bits (162), Expect = 1e-30 Identities = 162/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | || || || |||||| |||| || | ||||| ||||||||||||| Sbjct 1030 ATGGGTTCTCTAAATGTTAATCGTTATGTCAGCGATCCTTTCTATCGCTACAAAATGC-- 1087 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 | ||||| | || ||||| ||||| ||||| || || || || |||||||||||||||| Sbjct 1088 CTCATCTACTAGCAAAGGTGGAGGGCAAGGGTAATGGCATCAAGACCGTCATTGTCAACA 1147 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || ||| | |||| || | ||||| || || ||||| ||||| || ||||| || | Sbjct 1148 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTATTTTGGTT 1207 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||||||||||||| || || |||||| |||| Sbjct 1208 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 1241 >seq13293 Length=1349 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | || || || |||||| |||| || | ||||| ||||||||||||| Sbjct 3 ATGGGTTCTCTAAATGTTAATCGTTATGTAAGCGATCCTTTCTATCGCTACAAAATGC-- 60 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 | ||||||| || ||||| || || ||||| || || || || |||||||| ||||||| Sbjct 61 CCCATCTGCTAGCAAAGGTGGAAGGCAAGGGCAATGGCATCAAGACCGTCATAGTCAACA 120 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || ||| | |||| || | ||||| || || ||||| ||||| || ||||| || | Sbjct 121 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTATTTTGGTT 180 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||||||||||||| || || |||||| |||| Sbjct 181 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 214 >seq4718 Length=1987 Score = 132 bits (146), Expect = 3e-26 Identities = 159/214 (74%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221 ||||| | || || || |||||| |||| || | ||||| |||||||| ||||| Sbjct 442 ATGGGTTCTCTAAATGTTAATCGTTATGTCAGCGATCCTTTCTATCGCTACAAGATGCCT 383 Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279 | |||| | || ||||| ||||| ||||| || || || || |||||||| ||||||| Sbjct 382 C--ATCTACTAGCAAAGGTGGAGGGCAAGGGCAATGGCATCAAGACCGTCATAGTCAACA 325 Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339 || ||| | |||| || | ||||| || || ||||| ||||| || || || || | Sbjct 324 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTACTTTGGTT 265 Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373 | |||||||||||||| || || |||||| |||| Sbjct 264 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334820452734719