Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq14521 147 1e-30
seq13293 141 6e-29
seq4718 132 3e-26
>seq14521
Length=2880
Score = 147 bits (162), Expect = 1e-30
Identities = 162/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| | || || || |||||| |||| || | ||||| |||||||||||||
Sbjct 1030 ATGGGTTCTCTAAATGTTAATCGTTATGTCAGCGATCCTTTCTATCGCTACAAAATGC-- 1087
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
| ||||| | || ||||| ||||| ||||| || || || || ||||||||||||||||
Sbjct 1088 CTCATCTACTAGCAAAGGTGGAGGGCAAGGGTAATGGCATCAAGACCGTCATTGTCAACA 1147
Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339
|| ||| | |||| || | ||||| || || ||||| ||||| || ||||| || |
Sbjct 1148 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTATTTTGGTT 1207
Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||||||||||||| || || |||||| ||||
Sbjct 1208 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 1241
>seq13293
Length=1349
Score = 141 bits (156), Expect = 6e-29
Identities = 161/214 (75%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| | || || || |||||| |||| || | ||||| |||||||||||||
Sbjct 3 ATGGGTTCTCTAAATGTTAATCGTTATGTAAGCGATCCTTTCTATCGCTACAAAATGC-- 60
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
| ||||||| || ||||| || || ||||| || || || || |||||||| |||||||
Sbjct 61 CCCATCTGCTAGCAAAGGTGGAAGGCAAGGGCAATGGCATCAAGACCGTCATAGTCAACA 120
Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339
|| ||| | |||| || | ||||| || || ||||| ||||| || ||||| || |
Sbjct 121 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTATTTTGGTT 180
Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||||||||||||| || || |||||| ||||
Sbjct 181 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 214
>seq4718
Length=1987
Score = 132 bits (146), Expect = 3e-26
Identities = 159/214 (74%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 6162 ATGGGGACCCTGAACGTAAATCGTAATGTGGCGGACGCGTTCTACCGCTACAAAATGCCG 6221
||||| | || || || |||||| |||| || | ||||| |||||||| |||||
Sbjct 442 ATGGGTTCTCTAAATGTTAATCGTTATGTCAGCGATCCTTTCTATCGCTACAAGATGCCT 383
Query 6222 CGCATCTGC--GCCAAGGTCGAGGGTAAGGGAAACGGTATTAAAACCGTCATTGTCAACA 6279
| |||| | || ||||| ||||| ||||| || || || || |||||||| |||||||
Sbjct 382 C--ATCTACTAGCAAAGGTGGAGGGCAAGGGCAATGGCATCAAGACCGTCATAGTCAACA 325
Query 6280 TGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACCTACCCGACGAAATATTTCGGGT 6339
|| ||| | |||| || | ||||| || || ||||| ||||| || || || || |
Sbjct 324 TGATTGATATAGCTAGAGCTTTAGGACGTCCAGCTACCTATCCGACCAAGTACTTTGGTT 265
Query 6340 GCGAACTTGGCGCTCAGACGCAGTTTGATCACAA 6373
| |||||||||||||| || || |||||| ||||
Sbjct 264 GTGAACTTGGCGCTCAAACTCAATTTGATTACAA 231
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334820452734719
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |