Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2021 390 1e-103 seq4853 358 8e-94 seq12187 264 1e-65 >seq2021 Length=2943 Score = 390 bits (432), Expect = 1e-103 Identities = 968/1468 (66%), Gaps = 41/1468 (3%) Strand=Plus/Minus Query 61844 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 61903 |||| || ||||| || | | || || || ||||| || | ||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 61904 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 61963 || | || |||| ||||| ||||| || || ||||| |||| |||| || Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 61964 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023 || | ||| || || | |||||||||||||| || || || || | || || |||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 62082 || ||| |||||| | ||| ||||||| || || || || || | | || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 62083 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62140 | | | | |||| || |||||||||| || | ||||| ||| || || ||| Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 62141 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62200 |||| ||||| | |||||| ||| | | || | ||| |||| || || || ||| Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790 Query 62201 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 62260 || ||||||||||| | || || || |||||| ||||| || || | ||| |||||| Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730 Query 62261 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62320 || |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| | Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670 Query 62321 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62378 | || ||||| | ||||| || || || |||||||||| ||||| | ||| Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612 Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62438 |||| ||| || || ||| | ||| || |||| || | Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552 Query 62439 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 62475 | || || || ||| ||||||||| | ||||| || || Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492 Query 62476 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAG 62535 || || ||||| |||||||| ||||| || || | | |||||| | |||||| Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432 Query 62536 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595 || ||| |||||||| | ||| || || || ||||| |||||||| || |||||||| Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372 Query 62596 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62655 || || | ||| | | |||| || | || || || | || || ||||| || || Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312 Query 62656 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62712 ||| ||||| || | ||| | | |||||| || | || || || ||||| ||| Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255 Query 62713 ATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 62769 |||| | | ||| | |||||||| || | ||||| || || | ||||||||| Sbjct 1254 ATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAAC 1195 Query 62770 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62829 || | |||| | ||| ||||| || || |||||||| | ||| || |||||||| Sbjct 1194 AGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135 Query 62830 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 62889 || |||| ||| |||||||||||||| ||||| ||||||||||| || || |||| Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075 Query 62890 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 62949 ||| |||||||| | ||||| |||||||| || ||| | | | |||| || | | Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015 Query 62950 -AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008 |||| | | | ||| | || ||| ||| | | | ||||| || || |||| Sbjct 1014 GCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956 Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068 |||| | | ||||| || || | | || ||||| | ||||| || || || ||| Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896 Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63128 ||| |||||||| || | || || ||||| ||||| ||||| ||||| | | || Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836 Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188 || || || || ||||| || || | ||| | ||| | | ||||| || ||||| | Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776 Query 63189 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63248 |||| || || ||||| | | || || |||||| ||||||||||| | ||| | | Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCG 716 Query 63249 CGGTGTTATTATAAACTCTCAACATTGG 63276 | |||||| | || | || ||| || Sbjct 715 CCACGTTATTGAACACACGCAGCATAGG 688 >seq4853 Length=2014 Score = 358 bits (396), Expect = 8e-94 Identities = 868/1305 (67%), Gaps = 17/1305 (1%) Strand=Plus/Plus Query 62399 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62458 |||| ||| || || ||| | || || |||| || || || || || ||||||| Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203 Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518 || | ||||| || || || || ||||| |||||||| ||||| || || | | |||| Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263 Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578 || | |||||| || ||| |||||||| | ||| || || || ||||| ||| Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323 Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638 ||||| || |||||||| || || | ||| | | |||| || | || || || | Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383 Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 62695 || || ||||| || ||||| ||||| || | ||| | | |||||| || | || Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440 Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62752 || || ||||| ||||||| | | ||| | |||||||| || | ||||| Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATT 500 Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812 || || | ||||||||| || | |||| | ||| ||||| || || |||||||| Sbjct 501 GAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCAT 560 Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872 | ||| || |||||||| || |||| ||| |||||||||||||| ||||| |||||| Sbjct 561 AAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCC 620 Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932 ||||| || || ||||||| |||||||| | |||| |||||||| || ||| | | Sbjct 621 TTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAG 680 Query 62933 ACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 62991 | |||| || | | |||| | | | ||| | || ||| ||| | | | Sbjct 681 GTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTG 739 Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||| || || |||||||| | | ||||| || || | | || ||||| | || Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799 Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110 ||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| | Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAGA 858 Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170 ||| ||||| | | || || || || || ||||| || || | ||| | ||| | | Sbjct 859 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 918 Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230 ||||| || ||||| |||||||| || ||||| | | || || |||||| |||| Sbjct 919 ATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTC 978 Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290 ||||||| | ||| | || |||||| | || | || ||| || | | |||||| | Sbjct 979 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAG 1038 Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63348 | || ||||| || || | || | || |||| || || | | | ||| || Sbjct 1039 AGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CAG 1096 Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408 || || || ||||| || ||||| | |||||| | | || | | | || || Sbjct 1097 GCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATACC 1156 Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468 ||| || ||| | | ||| | || || |||||| |||| ||| | || || || Sbjct 1157 CTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTGT 1216 Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528 | ||| |||| || ||||| ||||||||||| | || || |||| |||||| Sbjct 1217 GGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGTA 1276 Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588 || || || || | || |||||| || || || || || |||||||| | | Sbjct 1277 GGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTAG 1336 Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648 || ||||| | || || || | || |||||||| || ||||| ||| | || Sbjct 1337 ATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTGT 1396 Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 || || || || || || || |||||| || || |||||||| Sbjct 1397 CTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873 |||| |||||| ||||||||||||| ||| || || || |||||||| || | ||| || Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775 Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933 ||| |||| ||| ||||| || ||||| || |||| || |||| | |||||||||| Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835 Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972 | ||| | || ||| ||| | || | ||||| || Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874 >seq12187 Length=3570 Score = 264 bits (292), Expect = 1e-65 Identities = 485/706 (69%), Gaps = 11/706 (2%) Strand=Plus/Minus Query 32495 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 32554 ||| || ||||| ||||||||| ||| | || |||||||| || || || || || Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658 Query 32555 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 32614 || || || |||| ||||| |||||||| || || || || ||| || Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598 Query 32615 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 32674 || || ||| ||| | || |||||||| ||||||||||| || || || || Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538 Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734 || | || ||||| | ||| | || ||||| || || || || ||||| || || Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478 Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794 ||| || |||||||| || || || || || ||| |||||||| || || || || Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418 Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGAGC 32851 ||||| || |||| | ||| ||| || ||| | | || ||| ||||| || Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGC 1358 Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911 |||||| |||||||| || ||| ||||| || || || || ||||| ||| | | Sbjct 1357 CCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACG 1298 Query 32912 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 32967 || || | || || |||||| |||||||||| || |||||||| || || | Sbjct 1297 TTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCA 1242 Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027 ||||| ||||| ||||| || || || || || | ||||| || || ||||||||| Sbjct 1241 CATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTT 1182 Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | || || ||| | ||||||||||| || || || ||| ||| || ||||| |||| Sbjct 1181 GGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCA 1122 Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33147 | ||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| | Sbjct 1121 AAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCT 1062 Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193 | ||| ||||||||| ||||||||||||||||| || || ||||| Sbjct 1061 TGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633386079500400