Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq2021 390 1e-103
seq4853 358 8e-94
seq12187 264 1e-65
>seq2021
Length=2943
Score = 390 bits (432), Expect = 1e-103
Identities = 968/1468 (66%), Gaps = 41/1468 (3%)
Strand=Plus/Minus
Query 61844 TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTT 61903
|||| || ||||| || | | || || || ||||| || | ||| ||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 61904 TTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCT 61963
|| | || |||| ||||| ||||| || || ||||| |||| |||| ||
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 61964 GCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATT 62023
|| | ||| || || | |||||||||||||| || || || || | || || ||||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970
Query 62024 TTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATA-AACTCGCTTAATATCTTC 62082
|| ||| |||||| | ||| ||||||| || || || || || | | || |
Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910
Query 62083 TGGAA--GGTTTGTATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCA 62140
| | | | |||| || |||||||||| || | ||||| ||| || || |||
Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850
Query 62141 TCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAAT 62200
|||| ||||| | |||||| ||| | | || | ||| |||| || || || |||
Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAGCAAATGATGATTCACCACCTGGAAT 1790
Query 62201 TCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACTCATTA 62260
|| ||||||||||| | || || || |||||| ||||| || || | ||| ||||||
Sbjct 1789 TCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCATTA 1730
Query 62261 TTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTA 62320
|| |||| ||||| ||||| || || || ||||| ||||| | | ||| ||| |
Sbjct 1729 TTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAGAATTACGC 1670
Query 62321 AGACCGTATGTTCTG--ATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGACGGTA 62378
| || ||||| | ||||| || || || |||||||||| ||||| | |||
Sbjct 1669 ACGCC--ATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATAGATCAGTAGGTG 1612
Query 62379 CAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTAT 62438
|||| ||| || || ||| | ||| || |||| || |
Sbjct 1611 TTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAAGTTT 1552
Query 62439 CGTA--TGGTCC---------TTC------------CTTCTCAGCTAGTTCACAACTCGC 62475
| || || || ||| ||||||||| | ||||| || ||
Sbjct 1551 CATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGCTGGC 1492
Query 62476 CTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAG 62535
|| || ||||| |||||||| ||||| || || | | |||||| | ||||||
Sbjct 1491 TTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTTAGCTTAAATGCTTCCTC 1432
Query 62536 GCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 62595
|| ||| |||||||| | ||| || || || ||||| |||||||| || ||||||||
Sbjct 1431 ACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCCAATACC 1372
Query 62596 GATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATC 62655
|| || | ||| | | |||| || | || || || | || || ||||| || ||
Sbjct 1371 TATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATTGATGTC 1312
Query 62656 TATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAGAAA 62712
||| ||||| || | ||| | | |||||| || | || || || ||||| |||
Sbjct 1311 TATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACTTCTTTGAGTTTTTTAAA 1255
Query 62713 ATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACAAAC 62769
|||| | | ||| | |||||||| || | ||||| || || | |||||||||
Sbjct 1254 ATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAAC 1195
Query 62770 GGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGAT 62829
|| | |||| | ||| ||||| || || |||||||| | ||| || ||||||||
Sbjct 1194 AGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGAT 1135
Query 62830 GGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGG 62889
|| |||| ||| |||||||||||||| ||||| ||||||||||| || || ||||
Sbjct 1134 AGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGG 1075
Query 62890 AGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTAT 62949
||| |||||||| | ||||| |||||||| || ||| | | | |||| || | |
Sbjct 1074 AGTGCCAGTTTCCACCTGAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGT 1015
Query 62950 -AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCC 63008
|||| | | | ||| | || ||| ||| | | | ||||| || || ||||
Sbjct 1014 GCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCC 956
Query 63009 AAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCT 63068
|||| | | ||||| || || | | || ||||| | ||||| || || || |||
Sbjct 955 AAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCT 896
Query 63069 TCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTAT 63128
||| |||||||| || | || || ||||| ||||| ||||| ||||| | | ||
Sbjct 895 CCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGAT 836
Query 63129 GTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACG 63188
|| || || || ||||| || || | ||| | ||| | | ||||| || ||||| |
Sbjct 835 ACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGG 776
Query 63189 GTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAG 63248
|||| || || ||||| | | || || |||||| ||||||||||| | ||| | |
Sbjct 775 GTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCCCTGATCCACGTAGCGCG 716
Query 63249 CGGTGTTATTATAAACTCTCAACATTGG 63276
| |||||| | || | || ||| ||
Sbjct 715 CCACGTTATTGAACACACGCAGCATAGG 688
>seq4853
Length=2014
Score = 358 bits (396), Expect = 8e-94
Identities = 868/1305 (67%), Gaps = 17/1305 (1%)
Strand=Plus/Plus
Query 62399 TGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTCA 62458
|||| ||| || || ||| | || || |||| || || || || || |||||||
Sbjct 144 TGTAAAATTCCCTTGCTGACAGGTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCA 203
Query 62459 GCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTT 62518
|| | ||||| || || || || ||||| |||||||| ||||| || || | | ||||
Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCAAATATTTGTTGATTT 263
Query 62519 AGATCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAAT 62578
|| | |||||| || ||| |||||||| | ||| || || || ||||| |||
Sbjct 264 AGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGAAT 323
Query 62579 CCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATA 62638
||||| || |||||||| || || | ||| | | |||| || | || || || |
Sbjct 324 CCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGC 383
Query 62639 GGATAATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACA 62695
|| || ||||| || ||||| ||||| || | ||| | | |||||| || | ||
Sbjct 384 GGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTGTTACAATT---TTAGCAACT 440
Query 62696 TCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACA 62752
|| || ||||| ||||||| | | ||| | |||||||| || | |||||
Sbjct 441 TCTTTGAGTTTTTTAAAATCATAAGTCTTGTCTGGGTTGACAAACATATTGAGTGCAATT 500
Query 62753 GATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAA 62812
|| || | ||||||||| || | |||| | ||| ||||| || || ||||||||
Sbjct 501 GAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCAT 560
Query 62813 AGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCC 62872
| ||| || |||||||| || |||| ||| |||||||||||||| ||||| ||||||
Sbjct 561 AAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCC 620
Query 62873 TTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACG 62932
||||| || || ||||||| |||||||| | |||| |||||||| || ||| | |
Sbjct 621 TTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCACAAG 680
Query 62933 ACTCGAGCCTTTATTAT-AGATTTGTATCTCTTTTCTCTTTCGTATAGTGTATACAATCG 62991
| |||| || | | |||| | | | ||| | || ||| ||| | | |
Sbjct 681 GTTTGAGCTTTAACAGTGCGATTGGCA-CGACCTTCACGCTCATATTTCTCATAAAGTTG 739
Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051
||||| || || |||||||| | | ||||| || || | | || ||||| | ||
Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799
Query 63052 CCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATA-A 63110
||| || || || ||| ||| |||||||| || | || || ||||| ||||| ||| |
Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGC-ATAGA 858
Query 63111 ATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCA 63170
||| ||||| | | || || || || || ||||| || || | ||| | ||| | |
Sbjct 859 ATAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAA 918
Query 63171 TAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTC 63230
||||| || ||||| |||||||| || ||||| | | || || |||||| ||||
Sbjct 919 ATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTC 978
Query 63231 CCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGG 63290
||||||| | ||| | || |||||| | || | || ||| || | | |||||| |
Sbjct 979 CCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAG 1038
Query 63291 ATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT--ATTACTAATTGATAG 63348
| || ||||| || || | || | || |||| || || | | | ||| ||
Sbjct 1039 AGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGCACATT--CAG 1096
Query 63349 ACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCC 63408
|| || || ||||| || ||||| | |||||| | | || | | | || ||
Sbjct 1097 GCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCTACGGACTTGAAAATACC 1156
Query 63409 CTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGT 63468
||| || ||| | | ||| | || || |||||| |||| ||| | || || ||
Sbjct 1157 CTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCTTGT 1216
Query 63469 TCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTA 63528
| ||| |||| || ||||| ||||||||||| | || || |||| ||||||
Sbjct 1217 GGCTGCAGCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCGCTCTGATAGTAAATTGTA 1276
Query 63529 CGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACAT 63588
|| || || || | || |||||| || || || || || |||||||| | |
Sbjct 1277 GGTTTCTATGGCCGCATCGATATCCTCGCCGTGTATGCCCACAGCCACACGCATCAGTAG 1336
Query 63589 GTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGT 63648
|| ||||| | || || || | || |||||||| || ||||| ||| | ||
Sbjct 1337 ATGTTGAGGACGCTCGACAATTTCCCCATTGATTTTCAATAAATAGGAACGTTCGAGTGT 1396
Query 63649 TTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693
|| || || || || || || |||||| || || ||||||||
Sbjct 1397 CTTGAATCCGAAGTAATTATAGCCAAAGTCGCGATCATAAATAAT 1441
Score = 98.7 bits (108), Expect = 1e-15
Identities = 117/159 (74%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 63814 AAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAATGGC 63873
|||| |||||| ||||||||||||| ||| || || || |||||||| || | ||| ||
Sbjct 1716 AAATGCTTTTTTCGTTTCTTTGTGTAAATTGGAGACTGCAATTCTAGCTGCCAAAATTGC 1775
Query 63874 ATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAATTC 63933
||| |||| ||| ||||| || ||||| || |||| || |||| | ||||||||||
Sbjct 1776 ATAGTCCGCATGATGTGTGGTCATCGTGGCAGCAGTTTCAGCAGCCAAATTGTCCAATTC 1835
Query 63934 TACCGTTGTTACACCATTATATATTCCTTGGATAACCTT 63972
| ||| | || ||| ||| | || | ||||| ||
Sbjct 1836 TCTGGTTTTAACTCCAGAATACAAGCCATTTATAACTTT 1874
>seq12187
Length=3570
Score = 264 bits (292), Expect = 1e-65
Identities = 485/706 (69%), Gaps = 11/706 (2%)
Strand=Plus/Minus
Query 32495 ATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAAC 32554
||| || ||||| ||||||||| ||| | || |||||||| || || || || ||
Sbjct 1717 ATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAGATTCAC 1658
Query 32555 TGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCT 32614
|| || || |||| ||||| |||||||| || || || || ||| ||
Sbjct 1657 AGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGATTTCAAG 1598
Query 32615 TACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGCA 32674
|| || ||| ||| | || |||||||| ||||||||||| || || || ||
Sbjct 1597 TATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAACAGGCAAAGTCACA 1538
Query 32675 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 32734
|| | || ||||| | ||| | || ||||| || || || || ||||| || ||
Sbjct 1537 ATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGGCATGAGACC 1478
Query 32735 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 32794
||| || |||||||| || || || || || ||| |||||||| || || || ||
Sbjct 1477 ACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACCCTCAACAGC 1418
Query 32795 CGCAAAGGCAATAAGTCTCTCTCCATAACCGGC-GCTGTC-ATGT-ATCCACTTTTGAGC 32851
||||| || |||| | ||| ||| || ||| | | || ||| ||||| ||
Sbjct 1417 TGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCAGGCCATGGC 1358
Query 32852 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 32911
|||||| |||||||| || ||| ||||| || || || || ||||| ||| | |
Sbjct 1357 CCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAGAAAATCACG 1298
Query 32912 ttCATTACTATCTTTAACATATGTA----TCAATCAAAAGACTATACATTTCCGAATGAA 32967
|| || | || || |||||| |||||||||| || |||||||| || || |
Sbjct 1297 TTGTTTTGTGTC----ACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGAGTGCA 1242
Query 32968 TGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTG 33027
||||| ||||| ||||| || || || || || | ||||| || || |||||||||
Sbjct 1241 CATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTACTTCTT 1182
Query 33028 TACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCA 33087
| || || ||| | ||||||||||| || || || ||| ||| || ||||| ||||
Sbjct 1181 GGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAATGCCA 1122
Query 33088 ATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTT 33147
| ||||| |||||||| | || | ||| | ||| | ||| ||||| ||||| |
Sbjct 1121 AAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCATATCCT 1062
Query 33148 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTT 33193
| ||| ||||||||| ||||||||||||||||| || || |||||
Sbjct 1061 TGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633386079500400
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