Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq9465 102 7e-17 seq26883 86.0 5e-12 seq14730 86.0 5e-12 >seq9465 Length=7312 Score = 102 bits (112), Expect = 7e-17 Identities = 178/254 (70%), Gaps = 10/254 (4%) Strand=Plus/Minus Query 50988 AAACTTACGCTTACAGCCCGCGTAGTTCATATACCTGATTCTGCCAAAAATTTTGCGTTC 51047 ||| || || |||||||| || |||||||| || | ||| | ||||||| | | || Sbjct 6633 AAATTTGCGTTTACAGCCAGCATAGTTCATGTAACGTATTTTACCAAAAACT----GCTC 6578 Query 51048 TTTGAACGG---CCTG-TCGTGCACACCGCAAATTGACCACATACAACCCACATAATTGT 51103 ||| | | | || || || | || ||||| |||||||||||||| ||| || | Sbjct 6577 TTTCACCCCATCCTTGATCATGTATGCCACAAATCGACCACATACAACCAACAAAACCAT 6518 Query 51104 TAGGATCGCGACCATCCA-CGCTGTAATGATCGTTTAGAAATATGGCATAACCCAATGCC 51162 ||||||| | || |||| ||| || | || || | | | |||||| |||| || Sbjct 6517 TAGGATCACTGCCGTCCAGCGCA-TACTTGTCATTCAAATAGATGGCAATTTCCAAAGCT 6459 Query 51163 ATGTCTGCACTAGGCGTCCATTCCATAATTTTCTTGGCCCAGTACATGCGCATGTAACCG 51222 | |||| ||| || |||||| | ||||| || ||||| ||||||||||| |||| Sbjct 6458 TTCTCTGGACTTTCCGACCATTCTAGTATTTTTTTAGCCCAATACATGCGCATAAAACCA 6399 Query 51223 TGCATCTTGCCCTC 51236 ||||| || ||||| Sbjct 6398 TGCATTTTACCCTC 6385 >seq26883 Length=1584 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25104 ATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACT 25163 ||||| || ||||||||||| | ||||| || ||||| ||||| || |||| ||||| Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622 Query 25164 GTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTG 25208 ||| ||||||||| |||||||| || || || | ||||| ||| Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTG 667 >seq14730 Length=2976 Score = 86.0 bits (94), Expect = 5e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 105550 AAAGGCTTGCACGGATTCCATGTACACGAATTCGGTGATACCAGCAATGGCTGTACATCA 105609 ||||||||||| || |||||||| |||||||| ||||||| || ||||||||| || ||| Sbjct 2265 AAAGGCTTGCATGGCTTCCATGTGCACGAATTTGGTGATAACACCAATGGCTGCACCTCA 2206 Query 105610 GCAGGCGAGCATTTTAATCC 105629 || ||| ||||| ||||| Sbjct 2205 GCTGGCCCTCATTTCAATCC 2186 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433164024486935