Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008464.1 Length=60238 Score E Sequences producing significant alignments: (Bits) Value seq2410 93.3 2e-14 seq1262 93.3 2e-14 >seq2410 Length=3205 Score = 93.3 bits (102), Expect = 2e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 59898 GCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 59956 |||| |||||||||| ||| ||||| | ||||||||||||| ||||||||||||||| | Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 59957 CCAGCAAGGGCCACCA 59972 |||||| ||||||||| Sbjct 1011 CCAGCAGGGGCCACCA 1026 Score = 82.4 bits (90), Expect = 3e-11 Identities = 64/75 (85%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 59899 CCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAATC 59957 ||| |||||||||| ||| ||||| ||||||||||||| |||||||||||||||| || Sbjct 2304 CCCCTTAGCTCAGTTGGTTAGAGCATACGACTCATAATCGTCAGGTCGCTGGTTCAAGTC 2363 Query 59958 CAGCAAGGGCCACCA 59972 ||||| | | ||||| Sbjct 2364 CAGCAGGAGGCACCA 2378 >seq1262 Length=72559 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 59896 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 59954 |||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836 Query 59955 ATCCAGCAAGGGCCACCA 59972 ||||||| ||||||||| Sbjct 63835 GTCCAGCAGGGGCCACCA 63818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 192568972307600