Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008515.1 Length=165890 Score E Sequences producing significant alignments: (Bits) Value seq2789 149 7e-31 >seq2789 Length=15484 Score = 149 bits (164), Expect = 7e-31 Identities = 498/763 (65%), Gaps = 19/763 (2%) Strand=Plus/Plus Query 41398 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41457 ||||||||||||||| | || ||| ||| || || || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 41458 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGTTTAGGAAAAAT 41517 |||||| ||| ||| ||||||| | | | ||||||||| ||||| | Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 41518 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAAAATTGCTTTCTGAAT 41577 | ||| | || || | || || || | ||| | || |||| ||| ||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 41578 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTC 41636 | || ||| | || | | | || ||||| || || ||||| || || |||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369 Query 41637 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 41696 | |||| || | |||||| | ||||||||| | |||| || ||||| | | Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATT 3429 Query 41697 CTTTTTCTGTTTTAGATTGGGCATAATTCAGTGCATCGGCGATTTGCCATTTTTCTGCGT 41756 ||||||| |||| | |||| || || || || ||| | ||||||||| | Sbjct 3430 CTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTT 3489 Query 41757 CCTCGATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACAT 41813 | | || ||| | || || |||| ||||||| | ||| || | ||| | || Sbjct 3490 CTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATAT 3546 Query 41814 TCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCGGTAATTTGTGCCATAA 41873 | || || ||||| || || ||| || || || || | ||||| || | | Sbjct 3547 TGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTA 3606 Query 41874 TTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCAAGCTTAAATC 41933 | || || || |||||||| ||||||||||| | ||||| || | ||||| | Sbjct 3607 TAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGC 3666 Query 41934 CGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGG 41993 | |||||||||||||||||||| ||||| ||||||| | ||||| | || | Sbjct 3667 CACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTG 3726 Query 41994 AATAATCAATATCATGAAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC- 42052 ||||||| | ||||||| ||||||| || ||||||| || ||| | | | | | Sbjct 3727 AATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCT 3782 Query 42053 --GGG----ACCTTATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGT 42106 ||| | | |||||| ||| |||||||| | |||||||| | | || | | Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842 Query 42107 TGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42149 |||||||||| |||| ||||||||||||||| || |||| Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 530514020934000