Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_008515.1
Length=165890
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 149 7e-31
>seq2789
Length=15484
Score = 149 bits (164), Expect = 7e-31
Identities = 498/763 (65%), Gaps = 19/763 (2%)
Strand=Plus/Plus
Query 41398 AATATCAGGATACATCCTTTTGCTTGCACACTCTAGAGCAAGCTGCTTAATATCATAGTT 41457
||||||||||||||| | || ||| ||| || || || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 41458 CGGATCGTCTTTATAAAGATTAACGCCTTCTTCAACGAACATAACAAGTTTAGGAAAAAT 41517
|||||| ||| ||| ||||||| | | | ||||||||| ||||| |
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 41518 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAAAATTGCTTTCTGAAT 41577
| ||| | || || | || || || | ||| | || |||| ||| |||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 41578 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGAGTCTGTC 41636
| || ||| | || | | | || ||||| || || ||||| || || ||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369
Query 41637 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGT 41696
| |||| || | |||||| | ||||||||| | |||| || ||||| | |
Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATT 3429
Query 41697 CTTTTTCTGTTTTAGATTGGGCATAATTCAGTGCATCGGCGATTTGCCATTTTTCTGCGT 41756
||||||| |||| | |||| || || || || ||| | ||||||||| |
Sbjct 3430 CTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTT 3489
Query 41757 CCTCGATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACAT 41813
| | || ||| | || || |||| ||||||| | ||| || | ||| | ||
Sbjct 3490 CTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATAT 3546
Query 41814 TCGCAAAAGTCGTTCCGCCGTATTGGTGAGAAGCAACCTGTGCGGTAATTTGTGCCATAA 41873
| || || ||||| || || ||| || || || || | ||||| || | |
Sbjct 3547 TGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTA 3606
Query 41874 TTGCAGTAGCAACGCCAATTGATTTAGGAGTTTCAATCTGCGCATTACCAAGCTTAAATC 41933
| || || || |||||||| ||||||||||| | ||||| || | ||||| |
Sbjct 3607 TAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGC 3666
Query 41934 CGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGGG 41993
| |||||||||||||||||||| ||||| ||||||| | ||||| | || |
Sbjct 3667 CACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTG 3726
Query 41994 AATAATCAATATCATGAAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC- 42052
||||||| | ||||||| ||||||| || ||||||| || ||| | | | | |
Sbjct 3727 AATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCT 3782
Query 42053 --GGG----ACCTTATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCGT 42106
||| | | |||||| ||| |||||||| | |||||||| | | || | |
Sbjct 3783 TTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTT 3842
Query 42107 TGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 42149
|||||||||| |||| ||||||||||||||| || ||||
Sbjct 3843 TGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 530514020934000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |