Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 336 2e-87
seq5394 129 7e-25
>seq12187
Length=3570
Score = 336 bits (372), Expect = 2e-87
Identities = 503/711 (71%), Gaps = 6/711 (1%)
Strand=Plus/Minus
Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979
||| | |||||| ||||| ||||| || | |||||| | | |||||||| || | ||
Sbjct 1723 TAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAG 1664
Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039
| ||||| || || || || | || |||| || ||| || || || | |||
Sbjct 1663 ATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGAT 1604
Query 93040 TTCTATTA--CTCT-ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096
||| | || | || || | | ||| || || || | || ||| |||| || || ||
Sbjct 1603 TTCAAGTATGCGCTCACGACTAGGT---TTCTGCACCAAATGTTTGAACATCAAACAGGC 1547
Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156
|||||| ||| || |||||||| ||||| |||| ||||||| |||||| | || ||
Sbjct 1546 AAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGG 1487
Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216
| || || |||||||| ||||| || || || || ||||| ||| || || |||||
Sbjct 1486 CATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACC 1427
Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276
|| || ||||||||||| | |||||| || ||||||| || || || ||||||
Sbjct 1426 CTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCA 1367
Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
| |||||||| || || ||||||| | ||| || ||||| || |||||||||||
Sbjct 1366 GGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAG 1307
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
|||| || | | | || |||||||| || || || || | |||||||||||
Sbjct 1306 AAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGA 1247
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
|| ||||| ||||| ||||||||||| || || ||||| | || || || || || ||
Sbjct 1246 GTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTAC 1187
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|||||| || | |||||| | |||||||||||| || ||||| || || || |||||
Sbjct 1186 TTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAA 1127
Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576
||||| | |||| ||||||||| |||||| |||| | | || ||||| || |
Sbjct 1126 TGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCAT 1067
Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627
||| || | | ||| ||||| || || |||||||| || ||||| || ||
Sbjct 1066 ATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
>seq5394
Length=1471
Score = 129 bits (142), Expect = 7e-25
Identities = 83/90 (92%), Gaps = 2/90 (2%)
Strand=Plus/Plus
Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319
|| |||||||||||||||| |||||||||||||||||||||| |||||||||| |||
Sbjct 1021 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 1080
Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAA 126349
||||||||||||||||||||||||||||||
Sbjct 1081 AGCGTGGGTTCGAACCCCACACCTGACAAA 1110
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556644675362760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |