Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq12187 336 2e-87 seq5394 129 7e-25 >seq12187 Length=3570 Score = 336 bits (372), Expect = 2e-87 Identities = 503/711 (71%), Gaps = 6/711 (1%) Strand=Plus/Minus Query 92920 TAATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAG 92979 ||| | |||||| ||||| ||||| || | |||||| | | |||||||| || | || Sbjct 1723 TAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATGCCAATCAG 1664 Query 92980 ACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGAT 93039 | ||||| || || || || | || |||| || ||| || || || | ||| Sbjct 1663 ATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCACATATGAT 1604 Query 93040 TTCTATTA--CTCT-ACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGC 93096 ||| | || | || || | | ||| || || || | || ||| |||| || || || Sbjct 1603 TTCAAGTATGCGCTCACGACTAGGT---TTCTGCACCAAATGTTTGAACATCAAACAGGC 1547 Query 93097 AAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGG 93156 |||||| ||| || |||||||| ||||| |||| ||||||| |||||| | || || Sbjct 1546 AAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGGCCAGG 1487 Query 93157 TAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACC 93216 | || || |||||||| ||||| || || || || ||||| ||| || || ||||| Sbjct 1486 CATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAAATACC 1427 Query 93217 TTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCA 93276 || || ||||||||||| | |||||| || ||||||| || || || |||||| Sbjct 1426 CTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAGATCCA 1367 Query 93277 TTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | |||||||| || || ||||||| | ||| || ||||| || ||||||||||| Sbjct 1366 GGCCATGGCCCAATCAGCCTTCTTCTTAACAGCAGGCAGCGTTTCAATGGCGTTAAATAG 1307 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 |||| || | | | || |||||||| || || || || | ||||||||||| Sbjct 1306 AAAATCACGTTGTTTTGTGTCACGTATGTAGGTGTCAATCAAAATGCTGTACATTTCAGA 1247 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 || ||||| ||||| ||||||||||| || || ||||| | || || || || || || Sbjct 1246 GTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTTATTTGTAC 1187 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| || | |||||| | |||||||||||| || ||||| || || || ||||| Sbjct 1186 TTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCGGCGAAAAA 1127 Query 93517 aGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAG 93576 ||||| | |||| ||||||||| |||||| |||| | | || ||||| || | Sbjct 1126 TGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAGTCATTCAT 1067 Query 93577 ATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTT 93627 ||| || | | ||| ||||| || || |||||||| || ||||| || || Sbjct 1066 ATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 >seq5394 Length=1471 Score = 129 bits (142), Expect = 7e-25 Identities = 83/90 (92%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 126262 TACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGG 126319 || |||||||||||||||| |||||||||||||||||||||| |||||||||| ||| Sbjct 1021 TATAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCCCGAGAGGG 1080 Query 126320 AGCGTGGGTTCGAACCCCACACCTGACAAA 126349 |||||||||||||||||||||||||||||| Sbjct 1081 AGCGTGGGTTCGAACCCCACACCTGACAAA 1110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556644675362760