Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 120 3e-22
seq2021 107 2e-18
seq26883 82.4 6e-11
>seq4853
Length=2014
Score = 120 bits (132), Expect = 3e-22
Identities = 603/944 (64%), Gaps = 30/944 (3%)
Strand=Plus/Plus
Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-T 129457
||||| || || || |||||||| || ||| ||||||| ||||| ||| |||| || |
Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCA--AATATTTGTTGAT 261
Query 129458 TCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCA 129517
| | | || | || ||||| || || ||||| | |||| || || |
Sbjct 262 TTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGA 321
Query 129518 AACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACA 129577
| ||||| | || | ||| ||||| ||||| |||| || | ||| | ||
Sbjct 322 ATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCA 381
Query 129578 AGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACG 129636
|| ||||| ||||||||||| |||||||| ||||| | || |||||||| | ||
Sbjct 382 GCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTG-TTACAATTTTAGCAACT 440
Query 129637 TATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAA 129696
| ||| | ||| ||||| || | || || || |||||| ||||| |
Sbjct 441 TCTTTGAGTTTTTTAAAATCATA--AGTCT-TGTCTGGGTTGACAAACATATTGAGTGCA 497
Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756
|| ||||| ||||| || || ||| |||| | | || || |||||||| | |
Sbjct 498 ATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTG 557
Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816
|| ||||| || || || ||||| | || || ||||||||| || || ||||||
Sbjct 558 CATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCA 617
Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC 129876
|| || || | ||| || || ||||| ||||| ||||| | || | ||||| ||
Sbjct 618 TCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCAC 677
Query 129877 AAGTCTCGAGCCTTGATCTGTCTTACAAATTTG--CCACATT---TCTCGTATGCCACAT 129931
||| | ||| ||| | | || ||| | | || || ||| ||| | |||
Sbjct 678 AAGGTTTGAG-CTTTAACAGT----GCGATTGGCACGACCTTCACGCTCATATTTCTCAT 732
Query 129932 ACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACA 129991
| ||||| || |||||| || || | || || | | | || ||||
Sbjct 733 AAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACA 792
Query 129992 TCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGG 130051
| | ||| ||||| || || || |||||||| ||||| ||||||| |||||| |
Sbjct 793 TGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAG 852
Query 130052 CGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCA 130107
| || || |||||||| || | ||| |||| | || || || | |||| ||
Sbjct 853 CATAGAATAAATCTCGTGCACGATACTCT-TCCTTGCCA-GTATTTTTC--TTCAAATCC 908
Query 130108 AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT 130167
| || || | || || | |||||| ||||| | ||| || || | || || |||
Sbjct 909 AAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGT 968
Query 130168 TTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCC 130224
||||| ||| || || |||| |||| | | || ||| | || |||| ||| | | |
Sbjct 969 TTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACT 1028
Query 130225 AATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGA 130284
|| || || | ||||| || |||| ||||| |||| || || | | |||
Sbjct 1029 AAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGC 1088
Query 130285 ACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA 130328
|| | || || |||||||| | | || || |||| |||||
Sbjct 1089 ACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCA 1132
>seq2021
Length=2943
Score = 107 bits (118), Expect = 2e-18
Identities = 704/1119 (63%), Gaps = 44/1119 (4%)
Strand=Plus/Minus
Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841
||||| ||||||| ||||| | || || ||||| ||||||||||| ||||| || ||
Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090
Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901
||||| || ||||||| || | || || | |||| | || | || | |
Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030
Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961
|| | || ||||| |||||||||||||| ||||| | || ||||| || |||||
Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970
Query 128962 CCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTT 129021
||| | | || || || ||||| || || ||||| | || | ||| || |
Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910
Query 129022 GGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGT 129081
||||| ||||| || || | | || | | ||||| | ||| ||| |
Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850
Query 129082 TCGTTGTACAAATTCAGTTTGATCAAATC--GTCGGTCAAGTATTTGTTTATTACTTGAA 129139
|| | | | || || | | ||||||| || | ||| | | || | || || |
Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAG--CAAATGATGATTCACCACCTGGA 1792
Query 129140 AGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCAT 129199
| ||||| | ||| || || || || || || || | |||||||| |||||||
Sbjct 1791 ATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCAT 1732
Query 129200 TGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAGTT 129257
| ||||| | ||||| || || | || || ||||| || | |||||| | ||
Sbjct 1731 TATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAG--AATT 1674
Query 129258 TCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTG 129315
|||| || || | ||| | | || | | | ||| | ||| | ||| ||
Sbjct 1673 ACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATA--GATCAGTA 1616
Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTG----GCGGGACTGGAAAA 129371
||||| | | ||||| || || || || || ||| ||| ||| | | | | ||
Sbjct 1615 GGTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAA 1556
Query 129372 GTAGGA--ATCGTGCACGC--------CGTA-------AGCTTTT--GCCAATTCGCAAC 129412
|| | | | || ||| | || ||||| | ||||| || || |
Sbjct 1555 GTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGC 1496
Query 129413 TCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGC 129470
| |||||||| || ||| ||||||| ||||| ||| |||| || || | | ||
Sbjct 1495 TGGCTTCCAAGGCACCATAATAAATCGTTTCA--AATATTTGTTGATTTAGCTTAAATGC 1438
Query 129471 CTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACC 129530
| || ||||| || || ||||| | |||| || || || ||||| | ||
Sbjct 1437 TTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCC 1378
Query 129531 CACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTT 129590
| ||| ||||| ||||| |||| || | ||| | || || ||||| ||
Sbjct 1377 AATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATT 1318
Query 129591 GATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTT 129649
||||||||| |||||||| ||||| | || |||||||| | || | ||| | |||
Sbjct 1317 GATGTCTATGATTTTGTTCAAATTACGTG-TTACAATTTTAGCAACTTCTTTGAGTTTTT 1259
Query 129650 CAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAAT 129709
||||| || | || || || |||||| ||||| ||| ||||| ||||
Sbjct 1258 TAAAATCATA--AGTCT-TGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAAT 1202
Query 129710 TGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTAT 129769
| || || ||| |||| | | || || |||||||| | ||| ||||| ||
Sbjct 1201 TACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGC 1142
Query 129770 TTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCA 129829
|| || ||||| | || || ||||||||| || || |||||||| || || | ||
Sbjct 1141 ACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCA 1082
Query 129830 TGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868
| || || ||||| ||||| || || | || | |||||
Sbjct 1081 TATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGG 1043
>seq26883
Length=1584
Score = 82.4 bits (90), Expect = 6e-11
Identities = 92/123 (75%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383
||||| || || ||||| ||| | || || || ||||| || || |||||| ||||||
Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622
Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443
| ||||||||||||||||||| || || || | ||||| || ||||| | || ||
Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682
Query 22444 GGT 22446
|||
Sbjct 683 GGT 685
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419569170858685
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |