Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq4853 120 3e-22 seq2021 107 2e-18 seq26883 82.4 6e-11 >seq4853 Length=2014 Score = 120 bits (132), Expect = 3e-22 Identities = 603/944 (64%), Gaps = 30/944 (3%) Strand=Plus/Plus Query 129400 GCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-T 129457 ||||| || || || |||||||| || ||| ||||||| ||||| ||| |||| || | Sbjct 204 GCCAACTCACAGCTGGCTTCCAAGGCACCATAATAAATCGTTTCA--AATATTTGTTGAT 261 Query 129458 TCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCA 129517 | | | || | || ||||| || || ||||| | |||| || || | Sbjct 262 TTAGCTTAAATGCTTCCTCACTTTCATATGGATAACGCATGAGTATCAATGCATCTGCGA 321 Query 129518 AACCTTGAATACCCACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACA 129577 | ||||| | || | ||| ||||| ||||| |||| || | ||| | || Sbjct 322 ATCCTTGTACTCCAATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCA 381 Query 129578 AGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACG 129636 || ||||| ||||||||||| |||||||| ||||| | || |||||||| | || Sbjct 382 GCGGGTAGTAATTGATGTCTATGATTTTGTTCAAATTACGTG-TTACAATTTTAGCAACT 440 Query 129637 TATTTTAACATTTCAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAA 129696 | ||| | ||| ||||| || | || || || |||||| ||||| | Sbjct 441 TCTTTGAGTTTTTTAAAATCATA--AGTCT-TGTCTGGGTTGACAAACATATTGAGTGCA 497 Query 129697 ATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCG 129756 || ||||| ||||| || || ||| |||| | | || || |||||||| | | Sbjct 498 ATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTG 557 Query 129757 CACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCA 129816 || ||||| || || || ||||| | || || ||||||||| || || |||||| Sbjct 558 CATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCA 617 Query 129817 TCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGGTCCTGAAC 129876 || || || | ||| || || ||||| ||||| ||||| | || | ||||| || Sbjct 618 TCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTTGAGCCTCTATAATGGCAAACCAC 677 Query 129877 AAGTCTCGAGCCTTGATCTGTCTTACAAATTTG--CCACATT---TCTCGTATGCCACAT 129931 ||| | ||| ||| | | || ||| | | || || ||| ||| | ||| Sbjct 678 AAGGTTTGAG-CTTTAACAGT----GCGATTGGCACGACCTTCACGCTCATATTTCTCAT 732 Query 129932 ACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGAGCAACGGCGATTCACGCGGACACA 129991 | ||||| || |||||| || || | || || | | | || |||| Sbjct 733 AAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACA 792 Query 129992 TCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATAAACAAATCGGGTACCCACAGGG 130051 | | ||| ||||| || || || |||||||| ||||| ||||||| |||||| | Sbjct 793 TGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAG 852 Query 130052 CGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGTTTCAGTTCA 130107 | || || |||||||| || | ||| |||| | || || || | |||| || Sbjct 853 CATAGAATAAATCTCGTGCACGATACTCT-TCCTTGCCA-GTATTTTTC--TTCAAATCC 908 Query 130108 AGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTGCGCCCTTCCGT 130167 | || || | || || | |||||| ||||| | ||| || || | || || ||| Sbjct 909 AAAAACTCAAATATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGT 968 Query 130168 TTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCAACATTGCCTCC 130224 ||||| ||| || || |||| |||| | | || ||| | || |||| ||| | | | Sbjct 969 TTGCCGCCTCCCTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACT 1028 Query 130225 AATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCCGAACGTTATGA 130284 || || || | ||||| || |||| ||||| |||| || || | | ||| Sbjct 1029 AAACCATTAGAGGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGCGCGTATGCAATGC 1088 Query 130285 ACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCA 130328 || | || || |||||||| | | || || |||| ||||| Sbjct 1089 ACATTCAGGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCA 1132 >seq2021 Length=2943 Score = 107 bits (118), Expect = 2e-18 Identities = 704/1119 (63%), Gaps = 44/1119 (4%) Strand=Plus/Minus Query 128782 TCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTT 128841 ||||| ||||||| ||||| | || || ||||| ||||||||||| ||||| || || Sbjct 2149 TCCACAGTAAATTGTATAGCATTGGCAGCTGGCTTCGTGCGCAAATAATACATACCGGTC 2090 Query 128842 TTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGGTTGA 128901 ||||| || ||||||| || | || || | |||| | || | || | | Sbjct 2089 TTCAAGCCTGCTTTCCAACCGTAGAAATGTATGGATGTCAGTTTACCATAATTCGGCTCA 2030 Query 128902 CTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATA 128961 || | || ||||| |||||||||||||| ||||| | || ||||| || ||||| Sbjct 2029 GCCACATGTATGTTAAACGATTGACTTTGATCTATAAAAGCACCACGATCAGCTGCCATT 1970 Query 128962 CCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTT 129021 ||| | | || || || ||||| || || ||||| | || | ||| || | Sbjct 1969 TTAATAGACGTCTTAACAGAAATCTCCCAAACTGTCTTGTACAAGTCACGCACATGCTGC 1910 Query 129022 GGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGT 129081 ||||| ||||| || || | | || | | ||||| | ||| ||| | Sbjct 1909 GGTATACGCTCAATATTTTGTATGGATCCACGTTCAGATATAATATCATTTTTCATATCA 1850 Query 129082 TCGTTGTACAAATTCAGTTTGATCAAATC--GTCGGTCAAGTATTTGTTTATTACTTGAA 129139 || | | | || || | | ||||||| || | ||| | | || | || || | Sbjct 1849 TCATCCCATAGATCAAGCTCGGTCAAATCACGTAG--CAAATGATGATTCACCACCTGGA 1792 Query 129140 AGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCAT 129199 | ||||| | ||| || || || || || || || | |||||||| ||||||| Sbjct 1791 ATTCACCAGACAATACACGACGTGTATAGATATTAGAAGTATAAGGCTCAAAAGATTCAT 1732 Query 129200 TGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCAC--GCAAAGCGAGTT 129257 | ||||| | ||||| || || | || || ||||| || | |||||| | || Sbjct 1731 TATTGCCCATGATTTGTGCAGTGGAGGCCGTAGGCATTGGTGCAATAAGCAAAG--AATT 1674 Query 129258 TCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGAT--GTG 129315 |||| || || | ||| | | || | | | ||| | ||| | ||| || Sbjct 1673 ACGCACGCCATGTTTAGCAATTTTCTCCTTCAGCTCCGCCCAATTCCATA--GATCAGTA 1616 Query 129316 GGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTG----GCGGGACTGGAAAA 129371 ||||| | | ||||| || || || || || ||| ||| ||| | | | | || Sbjct 1615 GGTGTTTTTTGCCACATATCATACTGTAAAATTCCCTTGCTGACAGGCGAGCCCGCATAA 1556 Query 129372 GTAGGA--ATCGTGCACGC--------CGTA-------AGCTTTT--GCCAATTCGCAAC 129412 || | | | || ||| | || ||||| | ||||| || || | Sbjct 1555 GTTTCATAANTGAGCCCGCATAAGTTTCATAGGGACCCAGCTTCTCAGCCAACTCACAGC 1496 Query 129413 TCGCTTCCAATGCGCCAAAATAAATTGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGC 129470 | |||||||| || ||| ||||||| ||||| ||| |||| || || | | || Sbjct 1495 TGGCTTCCAAGGCACCATAATAAATCGTTTCA--AATATTTGTTGATTTAGCTTAAATGC 1438 Query 129471 CTGGTCGCTTTCGTACGGCATACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACC 129530 | || ||||| || || ||||| | |||| || || || ||||| | || Sbjct 1437 TTCCTCACTTTCATATGGATAACGCATGAGTATTAATGCATCTGCGAATCCTTGTACGCC 1378 Query 129531 CACACCGATGGGTCGATGTTTTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTT 129590 | ||| ||||| ||||| |||| || | ||| | || || ||||| || Sbjct 1377 AATACCTATGGGACGATGACGCATATTTGAACGCTTGGCCTCCGGCAGCGGGTAGTAATT 1318 Query 129591 GATGTCTATAATTTTGTTTAAATT-CTTGACCACAATTTTCGTTACGTATTTTAACATTT 129649 ||||||||| |||||||| ||||| | || |||||||| | || | ||| | ||| Sbjct 1317 GATGTCTATGATTTTGTTCAAATTACGTG-TTACAATTTTAGCAACTTCTTTGAGTTTTT 1259 Query 129650 CAAAATTGTACTCGCCTACATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAAT 129709 ||||| || | || || || |||||| ||||| ||| ||||| |||| Sbjct 1258 TAAAATCATA--AGTCT-TGTCTGGGTTGACAAACATATTGAGTGCAATTGAGGCTAAAT 1202 Query 129710 TGCAGACGGCACTTTCGTTTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTAT 129769 | || || ||| |||| | | || || |||||||| | ||| ||||| || Sbjct 1201 TACAAACAGCAATTTCATCCGGTGCCGAATATTCTACAATTTCAGTGCATAAATTGCTGC 1142 Query 129770 TTTTAATGGTGCCCAAATGCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCA 129829 || || ||||| | || || ||||||||| || || |||||||| || || | || Sbjct 1141 ACTTGATAGTGCCTAGATTCTGTTGATTACTCTTGCGATTACAAGCATCCTTATAGAGCA 1082 Query 129830 TGTACGGCGTGCCCGTTTCGACTTGCGTTTCGACAATGG 129868 | || || ||||| ||||| || || | || | ||||| Sbjct 1081 TATATGGAGTGCCAGTTTCCACCTGAGCCTCTATAATGG 1043 >seq26883 Length=1584 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 22324 ATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACC 22383 ||||| || || ||||| ||| | || || || ||||| || || |||||| |||||| Sbjct 563 ATTCCCCCAGACCAACAGCGTTTGATTTTCGCTGGCAAGCAATTGGAGGATGGCCGCACA 622 Query 22384 GTCTCCGATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGA 22443 | ||||||||||||||||||| || || || | ||||| || ||||| | || || Sbjct 623 TTGGCCGATTACAACATTCAAAAGGAGTCTACATTGCATTTGGTGTTGCGTCTTCGTGGT 682 Query 22444 GGT 22446 ||| Sbjct 683 GGT 685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419569170858685