Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 147 4e-30
seq12187 125 1e-23
seq2021 102 2e-16
>seq4853
Length=2014
Score = 147 bits (162), Expect = 4e-30
Identities = 353/529 (67%), Gaps = 20/529 (4%)
Strand=Plus/Plus
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
|||||| || ||||| || || | ||| ||||||||| |||||||||||
Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
||| ||||| | ||| || | | |||||| | |||||| ||||| || || | |||
Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGCATAGAA 859
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
| || | | | | ||| ||| |||||| || ||| ||| |||||||| |||||
Sbjct 860 TAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAA 919
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
| || ||||||||| |||| |||| |||| ||| || || || ||| ||||||
Sbjct 920 TATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTCC 979
Query 245164 CTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223
||| ||||| | | | | ||||| | ||||| ||||||||| || |||||
Sbjct 980 CTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAGA 1039
Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280
| ||| || ||||| ||| | ||| ||| | | | ||| ||| ||||
Sbjct 1040 GGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGC---GCGTATGC-AATGCACATTCA 1095
Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA--GCTCTTGATGGTGTCTGCTAT 245337
||| | ||||| ||| ||||||||| | |||||| ||||| | || | ||
Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCT--ACGGACTTGAAAAT 1153
Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG----CT 245393
||||| ||| ||| | ||| ||||||| || ||||||||||| || || ||
Sbjct 1154 ACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCT 1213
Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCG 245442
|| ||||||| ||| || ||||| |||||| ||||| |||||
Sbjct 1214 TGTGGCTGCA----GCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCG 1258
>seq12187
Length=3570
Score = 125 bits (138), Expect = 1e-23
Identities = 294/437 (67%), Gaps = 14/437 (3%)
Strand=Plus/Plus
Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483
|||| || |||||||||||||| ||||| |||||||| || ||| | ||||
Sbjct 1122 TGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCC 1181
Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543
|||| || || ||||||||| || || || || ||||| || ||||| || || |
Sbjct 1182 AAGAAGTACAAATAACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATG 1241
Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603
|||||||||| ||||| || || | |||| ||||| | || | | |||
Sbjct 1242 TGCACTCTGAAATGTACAGCATTTTGATTGACACCTACATACGTGACACAAAACAACGTG 1301
Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGACTGGGCG 42662
| || || || ||||| || ||| || ||||| | ||||||||||| || |||||
Sbjct 1302 ATTTTCTATTTAACGCCATTGAAACGCTG-CCTGCTGTTAAGAAGAAGGCTGATTGGGCC 1360
Query 42663 CTCAACTGG-----ATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717
| |||| ||||| | || || | || || ||| | | |||| |||
Sbjct 1361 ATGGCCTGGATCTCATCGA-AATC----GGCCAATTTTGGTGAGCGTATTATAGCATTTG 1415
Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777
| || || ||||| || |||||| ||| |||||||| || |||||||| ||| | |
Sbjct 1416 CAGCTGTTGAGGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAG-AAA 1474
Query 42778 AGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836
| ||| ||||| || || || ||||| || || || || | ||||| || ||
Sbjct 1475 CGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTG 1534
Query 42837 CATAGGGACTTTGCCTG 42853
||| | |||||||||||
Sbjct 1535 CATTGTGACTTTGCCTG 1551
>seq2021
Length=2943
Score = 102 bits (112), Expect = 2e-16
Identities = 172/249 (69%), Gaps = 0/249 (0%)
Strand=Plus/Minus
Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983
|||||| || ||||| || || | ||| ||||||||| |||||||||||
Sbjct 972 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 913
Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043
||| ||||| | ||| || | | |||||| | |||||| ||||| || || | ||
Sbjct 912 CCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAA 853
Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103
| || | | | | ||| ||| |||||| || ||| ||| |||||||| |||||
Sbjct 852 TAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAA 793
Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163
| || ||||||||| || | |||| |||| |||||| || || ||| ||||||
Sbjct 792 TATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCC 733
Query 245164 CTGGTCCAC 245172
||| |||||
Sbjct 732 CTGATCCAC 724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943972690152240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |