Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq4853 147 4e-30 seq12187 125 1e-23 seq2021 102 2e-16 >seq4853 Length=2014 Score = 147 bits (162), Expect = 4e-30 Identities = 353/529 (67%), Gaps = 20/529 (4%) Strand=Plus/Plus Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 |||||| || ||||| || || | ||| ||||||||| ||||||||||| Sbjct 740 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 799 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| ||||| | ||| || | | |||||| | |||||| ||||| || || | ||| Sbjct 800 CCAATCGCCATCTGCCTCCACACGTTTCATGAACAAGTCGGGTATCCACAGAGCATAGAA 859 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | | | ||| ||| |||||| || ||| ||| |||||||| ||||| Sbjct 860 TAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAA 919 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 | || ||||||||| |||| |||| |||| ||| || || || ||| |||||| Sbjct 920 TATATCCGAGTGCCAGGGTTCCAAATAGATGGCGAAGGCACCTGGACGTTTGCCGCCTCC 979 Query 245164 CTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTAGA 245223 ||| ||||| | | | | ||||| | ||||| ||||||||| || ||||| Sbjct 980 CTGATCCACGTAGCGCGCCACGTTATTGAACACACGCAGCATAGGCACTAAACCATTAGA 1039 Query 245224 GTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGACAT--- 245280 | ||| || ||||| ||| | ||| ||| | | | ||| ||| |||| Sbjct 1040 GGTGCCATTCGTGCCAGCAATGCCCGTGCCTTTGGC---GCGTATGC-AATGCACATTCA 1095 Query 245281 -GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCA--GCTCTTGATGGTGTCTGCTAT 245337 ||| | ||||| ||| ||||||||| | |||||| ||||| | || | || Sbjct 1096 GGCCAATGCCGCCTGCGGACTTGGAGATCATGGCGCATTGCTCT--ACGGACTTGAAAAT 1153 Query 245338 GCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG----CT 245393 ||||| ||| ||| | ||| ||||||| || ||||||||||| || || || Sbjct 1154 ACCCTCGATGGAGTCAGCAACCATAGTGAGCAGGAAACAGGAGGACAGTTGTGGGCGTCT 1213 Query 245394 TGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCG 245442 || ||||||| ||| || ||||| |||||| ||||| ||||| Sbjct 1214 TGTGGCTGCA----GCGAATAGCGTGGGAGAGGCGTGAGTAAAATAGCG 1258 >seq12187 Length=3570 Score = 125 bits (138), Expect = 1e-23 Identities = 294/437 (67%), Gaps = 14/437 (3%) Strand=Plus/Plus Query 42424 TGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGA 42483 |||| || |||||||||||||| ||||| |||||||| || ||| | |||| Sbjct 1122 TGGCATTTTTCGCCGCCTCTGATGGCATTGTCAATGAAAATTTGGTAGAGCGTTTCAGCC 1181 Query 42484 AAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||| || || ||||||||| || || || || ||||| || ||||| || || | Sbjct 1182 AAGAAGTACAAATAACTGAGGCGCGTTGTTTTTATGGTTTCCAAATTGCCATGGAAAATG 1241 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 |||||||||| ||||| || || | |||| ||||| | || | | ||| Sbjct 1242 TGCACTCTGAAATGTACAGCATTTTGATTGACACCTACATACGTGACACAAAACAACGTG 1301 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGC-ATCAAGAAGAAGGCGGACTGGGCG 42662 | || || || ||||| || ||| || ||||| | ||||||||||| || ||||| Sbjct 1302 ATTTTCTATTTAACGCCATTGAAACGCTG-CCTGCTGTTAAGAAGAAGGCTGATTGGGCC 1360 Query 42663 CTCAACTGG-----ATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTA 42717 | |||| ||||| | || || | || || ||| | | |||| ||| Sbjct 1361 ATGGCCTGGATCTCATCGA-AATC----GGCCAATTTTGGTGAGCGTATTATAGCATTTG 1415 Query 42718 CCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA 42777 | || || ||||| || |||||| ||| |||||||| || |||||||| ||| | | Sbjct 1416 CAGCTGTTGAGGGTATTTTCTTCAGTGGCAGTTTCGCCTCTATTTTCTGGCTTAAG-AAA 1474 Query 42778 AGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 | ||| ||||| || || || ||||| || || || || | ||||| || || Sbjct 1475 CGTGGTCTCATGCCTGGCCTGACATTCTCCAATGAGCTGATTTCACGTGACGAAGGCTTG 1534 Query 42837 CATAGGGACTTTGCCTG 42853 ||| | ||||||||||| Sbjct 1535 CATTGTGACTTTGCCTG 1551 >seq2021 Length=2943 Score = 102 bits (112), Expect = 2e-16 Identities = 172/249 (69%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 244924 CTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACT 244983 |||||| || ||||| || || | ||| ||||||||| ||||||||||| Sbjct 972 CTCGAATTCTTCACCCCAAACTTCATGTAGTCCGGGGCACTTGTGTGGGCACATGAGTGA 913 Query 244984 CCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAA 245043 ||| ||||| | ||| || | | |||||| | |||||| ||||| || || | || Sbjct 912 CCAATCGCCATCTGCCTCCACACGTTTCATGAATAAGTCGGGTATCCATAGAGCATAAAA 853 Query 245044 GAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAA 245103 | || | | | | ||| ||| |||||| || ||| ||| |||||||| ||||| Sbjct 852 TAAATCTCGTGCACGATACTCTTCCTTGCCAGTATTTTTCTTCAAATCCAAAAACTCAAA 793 Query 245104 GACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTCC 245163 | || ||||||||| || | |||| |||| |||||| || || ||| |||||| Sbjct 792 TATATCCGAGTGCCAGGGTTCTAAATAGATGGCGAAGGCGCCTGGACGTTTGCCGCCTCC 733 Query 245164 CTGGTCCAC 245172 ||| ||||| Sbjct 732 CTGATCCAC 724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943972690152240