Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq9465 96.9 3e-15 >seq9465 Length=7312 Score = 96.9 bits (106), Expect = 3e-15 Identities = 185/273 (68%), Gaps = 0/273 (0%) Strand=Plus/Plus Query 37826 CACGCACGATCTCTTGTGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCA 37885 ||| ||||| || ||||| || || ||||| ||| | | |||||||| ||||| Sbjct 6339 CACACACGAGGATTTATGGAATGCAGCACAAATACAGTTGAAAAGGGAGGGTAAAATGCA 6398 Query 37886 TCAGTATATGCGCATGTATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGAC 37945 | | |||||||||||||||| || ||||| | |||||||| || | | ||| Sbjct 6399 TGGTTTTATGCGCATGTATTGGGCTAAAAAAATACTAGAATGGTCGGAAAGTCCAGAGAA 6458 Query 37946 CGCGCTCAACTACGCCATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAA 38005 || | | ||||| ||| | ||||| ||||| ||||||| ||||||| || Sbjct 6459 AGCTTTGGAAATTGCCATCTATTTGAATGACAAGTATGCGCTGGACGGCAGTGATCCTAA 6518 Query 38006 CGGTTACGTCGGCTGTTTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGAT 38065 |||| || || ||| ||||||| || || || |||| ||| || ||| | || | Sbjct 6519 TGGTTTTGTTGGTTGTATGTGGTCGATTTGTGGCATACATGATCAAGGATGGGGTGAAAG 6578 Query 38066 TCCCATTTACGGCAAGATTCGGTACATGAACTA 38098 | ||| || || || || ||||||||||| Sbjct 6579 AGCAGTTTTTGGTAAAATACGTTACATGAACTA 6611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396912147741298