Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq1845 114 2e-20 seq24243 113 5e-20 >seq1845 Length=2059 Score = 114 bits (126), Expect = 2e-20 Identities = 249/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| ||||| || || || | || || || || ||||| || | |||| ||||| Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | |||||||| | |||||||| | || | |||| ||| || ||| | Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 171903 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1731 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1674 Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 |||||||| ||||| | | ||| || ||||||||||||| || || | ||||| || Sbjct 1673 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1614 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 172022 ||| || || || | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1613 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1555 Query 172023 CACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCT 172082 |||||||||| ||||| ||||| || || || | | | ||| ||||||||||||| | Sbjct 1554 CACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTT 1495 Query 172083 CATCCTTG 172090 ||| |||| Sbjct 1494 CATGCTTG 1487 >seq24243 Length=2007 Score = 113 bits (124), Expect = 5e-20 Identities = 296/447 (66%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 171726 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 171785 |||| ||||| || || || | || || || || ||||| || | |||| ||||| Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495 Query 171786 AGTCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTTGAGCACGGGGTCGTCCCTCG 171845 | | |||||||| | |||||||| | || | |||| ||| || ||| | Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435 Query 171846 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 171903 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1434 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1377 Query 171904 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTGAT 171963 |||||||| ||||| | | ||| || ||||||||||||| || || | ||||| || Sbjct 1376 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1317 Query 171964 ATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 172022 ||| || || || | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1316 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1258 Query 172023 CACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTCATCT 172082 |||||||||| ||||| ||||| || || || | | | ||| |||||||| |||| | Sbjct 1257 CACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTT 1198 Query 172083 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 172142 ||| |||| || | |||||| | | | ||||| | ||| ||| || | || Sbjct 1197 CATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGC 1138 Query 172143 CGTCGGCCATGTGCGCGATGGAACGCT 172169 |||| ||||| | ||||| |||| Sbjct 1137 CGTCCACCATGGAGGGTATGGAGCGCT 1111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597121759600920