Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_011357.1
Length=62147
Score E
Sequences producing significant alignments: (Bits) Value
seq9943 129 2e-25
seq2410 87.8 7e-13
seq1262 86.0 2e-12
>seq9943
Length=1475
Score = 129 bits (142), Expect = 2e-25
Identities = 145/189 (77%), Gaps = 4/189 (2%)
Strand=Plus/Plus
Query 15464 CGGCCATGTTTTCATTTTCCGGGGCCGCAGCGGCAGTCAGGTTAAAC-TGCTGTGGTCC- 15521
||| ||| | || || |||||||| || ||||| | || | |||| |||||||| |
Sbjct 1250 CGGGCATCTGTTTATCTTCCGGGGGCGTCGCGGC-GACATGATAAAGGTGCTGTGGGCGG 1308
Query 15522 ACCGGTGACGGACTGTGCCTCCTGACCAAACGGCTGGAGCGTGGGCGCTTCGCCTGGCCG 15581
||||| ||||| |||||||| | ||||||||||||||||| || ||||||| ||||||
Sbjct 1309 ACCGG-GACGGCCTGTGCCTGTTCACCAAACGGCTGGAGCGGGGTCGCTTCGTGTGGCCG 1367
Query 15582 TCAGCCCGTGATGGCAAAGTGTTCCTTACGCAGGCGCAGCTGGCGATGCTGCTGGAAGGT 15641
|||| || || || ||| ||| |||| ||||||| || | ||||||||||||||
Sbjct 1368 GTGACCCGCGACGGTAAGGTGCACCTGACGCCGGCGCAGTTGTCTATGCTGCTGGAAGGC 1427
Query 15642 ATCGACTGG 15650
|| |||||
Sbjct 1428 ATTAACTGG 1436
>seq2410
Length=3205
Score = 87.8 bits (96), Expect = 7e-13
Identities = 67/77 (87%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 24381 GCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 24439
|||| |||||||||| ||| ||||| | ||||||||||||| ||||||||||||||| |
Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010
Query 24440 CCAGCA-AGGCCACCAA 24455
|||||| |||||||||
Sbjct 1011 CCAGCAGGGGCCACCAA 1027
Score = 84.2 bits (92), Expect = 9e-12
Identities = 66/79 (84%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 24545 TGCGTTGTTAGCTCAGCAGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGA 24604
|||||||||||||||| ||| ||||||| ||||||||||||| | ||||| |||||||
Sbjct 872 TGCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCGA 931
Query 24605 ATCCAGTACAACGCGCCAC 24623
|||| |||| || ||||
Sbjct 932 ATCCTATACAGCGTACCAC 950
>seq1262
Length=72559
Score = 86.0 bits (94), Expect = 2e-12
Identities = 68/79 (86%), Gaps = 2/79 (3%)
Strand=Plus/Minus
Query 24379 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 24437
|||||| |||||||||| ||| ||||| ||||||||||||| |||||||||||||||
Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836
Query 24438 ATCCAGCA-AGGCCACCAA 24455
||||||| |||||||||
Sbjct 63835 GTCCAGCAGGGGCCACCAA 63817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 198675519951042
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |