Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_011357.1 Length=62147 Score E Sequences producing significant alignments: (Bits) Value seq9943 129 2e-25 seq2410 87.8 7e-13 seq1262 86.0 2e-12 >seq9943 Length=1475 Score = 129 bits (142), Expect = 2e-25 Identities = 145/189 (77%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 15464 CGGCCATGTTTTCATTTTCCGGGGCCGCAGCGGCAGTCAGGTTAAAC-TGCTGTGGTCC- 15521 ||| ||| | || || |||||||| || ||||| | || | |||| |||||||| | Sbjct 1250 CGGGCATCTGTTTATCTTCCGGGGGCGTCGCGGC-GACATGATAAAGGTGCTGTGGGCGG 1308 Query 15522 ACCGGTGACGGACTGTGCCTCCTGACCAAACGGCTGGAGCGTGGGCGCTTCGCCTGGCCG 15581 ||||| ||||| |||||||| | ||||||||||||||||| || ||||||| |||||| Sbjct 1309 ACCGG-GACGGCCTGTGCCTGTTCACCAAACGGCTGGAGCGGGGTCGCTTCGTGTGGCCG 1367 Query 15582 TCAGCCCGTGATGGCAAAGTGTTCCTTACGCAGGCGCAGCTGGCGATGCTGCTGGAAGGT 15641 |||| || || || ||| ||| |||| ||||||| || | |||||||||||||| Sbjct 1368 GTGACCCGCGACGGTAAGGTGCACCTGACGCCGGCGCAGTTGTCTATGCTGCTGGAAGGC 1427 Query 15642 ATCGACTGG 15650 || ||||| Sbjct 1428 ATTAACTGG 1436 >seq2410 Length=3205 Score = 87.8 bits (96), Expect = 7e-13 Identities = 67/77 (87%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 24381 GCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 24439 |||| |||||||||| ||| ||||| | ||||||||||||| ||||||||||||||| | Sbjct 951 GCCCCTTAGCTCAGTTGGTTAGAGCAAACGACTCATAATCGTTAGGTCGCTGGTTCAAGT 1010 Query 24440 CCAGCA-AGGCCACCAA 24455 |||||| ||||||||| Sbjct 1011 CCAGCAGGGGCCACCAA 1027 Score = 84.2 bits (92), Expect = 9e-12 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 24545 TGCGTTGTTAGCTCAGCAGGACAGAGCAATTGCCTTCTAAGCAATCGGTCACTGGTTCGA 24604 |||||||||||||||| ||| ||||||| ||||||||||||| | ||||| ||||||| Sbjct 872 TGCGTTGTTAGCTCAGTTGGATAGAGCAACTGCCTTCTAAGCAGTAGGTCATAGGTTCGA 931 Query 24605 ATCCAGTACAACGCGCCAC 24623 |||| |||| || |||| Sbjct 932 ATCCTATACAGCGTACCAC 950 >seq1262 Length=72559 Score = 86.0 bits (94), Expect = 2e-12 Identities = 68/79 (86%), Gaps = 2/79 (3%) Strand=Plus/Minus Query 24379 CGGCCCTTTAGCTCAGT-GGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAA 24437 |||||| |||||||||| ||| ||||| ||||||||||||| ||||||||||||||| Sbjct 63895 CGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGTTCAA 63836 Query 24438 ATCCAGCA-AGGCCACCAA 24455 ||||||| ||||||||| Sbjct 63835 GTCCAGCAGGGGCCACCAA 63817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198675519951042