Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_011976.1 Length=43016 Score E Sequences producing significant alignments: (Bits) Value seq27062 80.6 7e-11 seq6609 80.6 7e-11 >seq27062 Length=1613 Score = 80.6 bits (88), Expect = 7e-11 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 20419 GCCATTAAATTTTGAGTTGCCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAAT 20478 |||||| || |||||| || || ||||| ||||| | ||||||||| | ||| | Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554 Query 20479 TTTTCCACCTACCCATGACAAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTT 20538 || || || ||||| || ||| || |||||||| |||||||||||||| | |||| Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494 Query 20539 TATGTTTTCAAC 20550 || | |||||| Sbjct 1493 AATATCTTCAAC 1482 >seq6609 Length=13971 Score = 80.6 bits (88), Expect = 7e-11 Identities = 198/295 (67%), Gaps = 4/295 (1%) Strand=Plus/Plus Query 20140 AATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGAC 20199 ||||||| || | ||||| | ||| |||| |||||||| || || || || | || Sbjct 5619 AATATATTTGGGTCTATTTTTAACTTCATTATATATTCTTCCTATATATTCTCCCATTAC 5678 Query 20200 ACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTA-TTGAAACTAACAATGATGGAT 20258 || | |||||||| |||| ||| || | ||| ||| ||| || || || || |||| Sbjct 5679 TCCTAATCCTATTAATTGTATTCCACCTAT-AAATGTAATTGCTACAAATAAAGACGGAT 5737 Query 20259 ATCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGA 20318 | || | || | ||||||| |||| | || |||| ||| || |||| |||| | Sbjct 5738 AACCAGCAATATTATTTCCAAATAACATTTTATCTATAATTATTTTAAATCCAAAAATAA 5797 Query 20319 AGGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGA 20378 | || ||| | || |||||||| ||| |||| || ||||| || | Sbjct 5798 AAGAAATAGAGGCCATTAAAAATCCGATGTAACACCATATTCT-AAGTGGAATTGTGCTA 5856 Query 20379 AACTT-GTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTG 20432 || ||||| ||||| | |||| ||||||| ||||| |||||||||||| Sbjct 5857 AATGAAGTTATTCCTTCTACCGCCAAATTCCATAACTTCCATGCATTAAATTTTG 5911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 137478891890964