Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_011976.1
Length=43016
Score E
Sequences producing significant alignments: (Bits) Value
seq27062 80.6 7e-11
seq6609 80.6 7e-11
>seq27062
Length=1613
Score = 80.6 bits (88), Expect = 7e-11
Identities = 97/132 (73%), Gaps = 0/132 (0%)
Strand=Plus/Minus
Query 20419 GCCATTAAATTTTGAGTTGCCGGCAACACGCTCAGCCCTTGAATACTCAACAACATCAAT 20478
|||||| || |||||| || || ||||| ||||| | ||||||||| | ||| |
Sbjct 1613 GCCATTGAACTTTGAGGCCCCAGCTACACGTTCAGCACGGACATACTCAACGATATCGAC 1554
Query 20479 TTTTCCACCTACCCATGACAAAACGCCTTTCATGAATAGATTGCGCTCAGGAAGTAGTTT 20538
|| || || ||||| || ||| || |||||||| |||||||||||||| | ||||
Sbjct 1553 ATTACCCCCCACCCAGCTCAGAACCCCCTTCATGAAGAGATTGCGCTCAGGCATACGTTT 1494
Query 20539 TATGTTTTCAAC 20550
|| | ||||||
Sbjct 1493 AATATCTTCAAC 1482
>seq6609
Length=13971
Score = 80.6 bits (88), Expect = 7e-11
Identities = 198/295 (67%), Gaps = 4/295 (1%)
Strand=Plus/Plus
Query 20140 AATATATCGCGGGCGtttttttATTTCTGTATAAATTCTTCCGATGTACTCACCAAGGAC 20199
||||||| || | ||||| | ||| |||| |||||||| || || || || | ||
Sbjct 5619 AATATATTTGGGTCTATTTTTAACTTCATTATATATTCTTCCTATATATTCTCCCATTAC 5678
Query 20200 ACCAATGCCTATTAACTGTACTCCTCCAAGGAAAAGTA-TTGAAACTAACAATGATGGAT 20258
|| | |||||||| |||| ||| || | ||| ||| ||| || || || || ||||
Sbjct 5679 TCCTAATCCTATTAATTGTATTCCACCTAT-AAATGTAATTGCTACAAATAAAGACGGAT 5737
Query 20259 ATCCTGGAACACTATTTCCGAATAGAAGCTTGTCTAAAATCATCCATGCTCCATAAATGA 20318
| || | || | ||||||| |||| | || |||| ||| || |||| |||| |
Sbjct 5738 AACCAGCAATATTATTTCCAAATAACATTTTATCTATAATTATTTTAAATCCAAAAATAA 5797
Query 20319 AGGACGCGCTGGCAACAGCAAGACCGATGTAGGTCCACATTCGCAACGGGAATGTTGAGA 20378
| || ||| | || |||||||| ||| |||| || ||||| || |
Sbjct 5798 AAGAAATAGAGGCCATTAAAAATCCGATGTAACACCATATTCT-AAGTGGAATTGTGCTA 5856
Query 20379 AACTT-GTTATACCTTCAAGTGCCAGGTTCCATAGTTTCCAGCCATTAAATTTTG 20432
|| ||||| ||||| | |||| ||||||| ||||| ||||||||||||
Sbjct 5857 AATGAAGTTATTCCTTCTACCGCCAAATTCCATAACTTCCATGCATTAAATTTTG 5911
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 137478891890964
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |