Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_012635.1 Length=168394 Score E Sequences producing significant alignments: (Bits) Value seq2789 131 2e-25 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 131 bits (144), Expect = 2e-25 Identities = 501/768 (65%), Gaps = 29/768 (4%) Strand=Plus/Plus Query 43891 AATATCAGGATACATCCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTT 43950 ||||||||||||||| | || ||| ||| || | || || || || |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 43951 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 44007 |||||| ||| ||| ||||||| | |||| |||||| || || || Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAA 3247 Query 44008 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 44067 | | ||| | || || | || || || | ||| | | |||| ||| || Sbjct 3248 TACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTG 3307 Query 44068 AATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTT 44126 ||| | || ||| | || | | | || ||||| || || ||||| || |||| Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTT 3366 Query 44127 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 44186 |||| |||| || | |||||| | ||||||||| | |||| || ||||| | | Sbjct 3367 GTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-A 3425 Query 44187 CAT-CTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTC 44244 ||| ||||||| |||| | | |||| |||| | | || | ||| | ||||||| Sbjct 3426 CATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTC 3484 Query 44245 TGCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATC 44301 || || | ||| ||| | || || |||| ||||||| | ||| || | ||| Sbjct 3485 TGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATC 3541 Query 44302 TACATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGC 44361 | ||| || || ||||| || || ||| || || || || | ||||| || Sbjct 3542 GATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGC 3601 Query 44362 CATAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTT 44421 | || || || || || ||||| ||||||||||| | ||||| || | || Sbjct 3602 AGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTT 3661 Query 44422 AAATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGC 44481 ||| || |||||||||||||||||||| ||||| ||||||| | ||||| | Sbjct 3662 AAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAA 3721 Query 44482 AGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAA 44541 || |||||||| | |||||| ||||||| || ||||||| || ||| | | | Sbjct 3722 TGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--A 3777 Query 44542 AGAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGT 44594 | | || | || |||||| ||| |||||||| | |||||||| | | | Sbjct 3778 CGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAAT 3837 Query 44595 CCCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 44642 | | ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3838 CTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 71507 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 71565 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 71566 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 71622 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 71623 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 71653 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 538523711066160