Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_012635.1
Length=168394
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 131 2e-25
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 131 bits (144), Expect = 2e-25
Identities = 501/768 (65%), Gaps = 29/768 (4%)
Strand=Plus/Plus
Query 43891 AATATCAGGATACATCCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTT 43950
||||||||||||||| | || ||| ||| || | || || || || |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 43951 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAA---CAAACATAACAAGCTTAGGGAA 44007
|||||| ||| ||| ||||||| | |||| |||||| || || ||
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAA---AACAAGTTTTGGAAA 3247
Query 44008 AATAGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTG 44067
| | ||| | || || | || || || | ||| | | |||| ||| ||
Sbjct 3248 TACTGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTG 3307
Query 44068 AATCATTCGTTCAG-TCCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTT 44126
||| | || ||| | || | | | || ||||| || || ||||| || ||||
Sbjct 3308 AATTAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTT 3366
Query 44127 GTCCGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATA 44186
|||| |||| || | |||||| | ||||||||| | |||| || ||||| | |
Sbjct 3367 GTCCATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-A 3425
Query 44187 CAT-CTTTTTCTGTTTTAGATTGAGCATAATTTAAC-GCATCAGCGATTTGCCATTTTTC 44244
||| ||||||| |||| | | |||| |||| | | || | ||| | |||||||
Sbjct 3426 CATTCTTTTTCAATTTTTTCATTAACATA-TTTATCTGGATTGGGGATATTATATTTTTC 3484
Query 44245 TGCATCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATC 44301
|| || | ||| ||| | || || |||| ||||||| | ||| || | |||
Sbjct 3485 TGTTTCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATC 3541
Query 44302 TACATTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGC 44361
| ||| || || ||||| || || ||| || || || || | ||||| ||
Sbjct 3542 GATATTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGC 3601
Query 44362 CATAATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTT 44421
| || || || || || ||||| ||||||||||| | ||||| || | ||
Sbjct 3602 AGTTATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTT 3661
Query 44422 AAATCCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGC 44481
||| || |||||||||||||||||||| ||||| ||||||| | ||||| |
Sbjct 3662 AAAGCCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAA 3721
Query 44482 AGGGGAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAA 44541
|| |||||||| | |||||| ||||||| || ||||||| || ||| | | |
Sbjct 3722 TGGTGAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--A 3777
Query 44542 AGAC----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGT 44594
| | || | || |||||| ||| |||||||| | |||||||| | | |
Sbjct 3778 CGTCTTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAAT 3837
Query 44595 CCCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 44642
| | ||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3838 CTCTTTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 71507 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 71565
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 71566 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 71622
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 71623 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 71653
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 538523711066160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |