Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_012638.1
Length=165429
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 134 1e-26
seq2410 84.2 2e-11
>seq2789
Length=15484
Score = 134 bits (148), Expect = 1e-26
Identities = 497/764 (65%), Gaps = 21/764 (3%)
Strand=Plus/Plus
Query 41109 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTT 41168
||||||||||||||| | || ||| || || || || || ||||| |||||||| ||
Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190
Query 41169 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 41228
|||||| ||| ||| ||||||| | | | |||||| || || || |
Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250
Query 41229 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41288
| ||| | || || | || || || | ||| | | |||| ||| |||||
Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310
Query 41289 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTC 41347
| || ||| | || | | | || ||||| || || ||||| || |||||||
Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369
Query 41348 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACAT 41407
| |||| || | |||||| | ||||||||| | |||| || ||||| | ||||
Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACAT 3428
Query 41408 -CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCA 41466
||||||| |||| | | |||| || | || | ||| | |||||||||
Sbjct 3429 TCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTT 3488
Query 41467 TCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACA 41523
|| | ||| ||| | || || |||| ||||||| | ||| || | ||| | |
Sbjct 3489 TCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATA 3545
Query 41524 TTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATA 41583
|| || || ||||| || || ||| || || || || | ||||| || |
Sbjct 3546 TTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTT 3605
Query 41584 ATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAAT 41643
|| || || || || ||||| ||||||||||| | ||||| || | |||||
Sbjct 3606 ATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAG 3665
Query 41644 CCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGG 41703
|| |||||||||||||||||||| ||||| ||||||| | ||||| | ||
Sbjct 3666 CCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGT 3725
Query 41704 GAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC 41763
|||||||| | |||||| ||||||| || ||||||| || ||| | | | | |
Sbjct 3726 GAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTC 3781
Query 41764 ----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 41816
|| | || |||||| ||| |||||||| | |||||||| | | || |
Sbjct 3782 TTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCT 3841
Query 41817 TTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 41860
||||||||||| |||| ||||||||||||||| || ||||
Sbjct 3842 TTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
>seq2410
Length=3205
Score = 84.2 bits (92), Expect = 2e-11
Identities = 114/152 (75%), Gaps = 8/152 (5%)
Strand=Plus/Minus
Query 68347 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 68405
|||||||||| | |||| |||||||| | | || ||||||||||||| ||||| |||
Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968
Query 68406 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 68462
| | ||||| |||| | |||| |||| | ||| ||||||| ||||| || |
Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911
Query 68463 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 68493
|| ||| |||||||||| || ||||||||||
Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 529039393477560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |