Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_012638.1 Length=165429 Score E Sequences producing significant alignments: (Bits) Value seq2789 134 1e-26 seq2410 84.2 2e-11 >seq2789 Length=15484 Score = 134 bits (148), Expect = 1e-26 Identities = 497/764 (65%), Gaps = 21/764 (3%) Strand=Plus/Plus Query 41109 AATATCAGGATACATCCTTTTGCTTGCGCACTCTAGAGCAAGCTGTTTAATATCATAGTT 41168 ||||||||||||||| | || ||| || || || || || ||||| |||||||| || Sbjct 3131 AATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATT 3190 Query 41169 CGGATCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGCTTAGGGAAAAT 41228 |||||| ||| ||| ||||||| | | | |||||| || || || | Sbjct 3191 AGGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATAC 3250 Query 41229 AGGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAAT 41288 | ||| | || || | || || || | ||| | | |||| ||| ||||| Sbjct 3251 TGCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAAT 3310 Query 41289 CATTCGTTCAG-TCCAGTCAGTTCCCGTACCAAATGTAATTGTTACAAAAGGCGTTTGTC 41347 | || ||| | || | | | || ||||| || || ||||| || ||||||| Sbjct 3311 TAATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTC 3369 Query 41348 CGTTTGAACTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACAT 41407 | |||| || | |||||| | ||||||||| | |||| || ||||| | |||| Sbjct 3370 CATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAA-ACAT 3428 Query 41408 -CTTTTTCTGTTTTAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGCA 41466 ||||||| |||| | | |||| || | || | ||| | ||||||||| Sbjct 3429 TCTTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTT 3488 Query 41467 TCCTCAATATGTTTTGCAT-AGGTGCGTTTAACATAAGGAG--AAAGTACTTTATCTACA 41523 || | ||| ||| | || || |||| ||||||| | ||| || | ||| | | Sbjct 3489 TCTTTAATTAACTTTATTTCAGAAGCTTTTA-CATAAGGGGCTAAAATAAT--ATCGATA 3545 Query 41524 TTAGCAAAAGTCGTTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATA 41583 || || || ||||| || || ||| || || || || | ||||| || | Sbjct 3546 TTGTTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTT 3605 Query 41584 ATTGCAGTAGCAACACCGATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAAT 41643 || || || || || ||||| ||||||||||| | ||||| || | ||||| Sbjct 3606 ATAGCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAG 3665 Query 41644 CCGTTCTCAAGCATTCCTTTTAAATCTACTAAACAACAATTAGTAAATGGAAGAGCAGGG 41703 || |||||||||||||||||||| ||||| ||||||| | ||||| | || Sbjct 3666 CCACCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGT 3725 Query 41704 GAATAATCAATATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGAC 41763 |||||||| | |||||| ||||||| || ||||||| || ||| | | | | | Sbjct 3726 GAATAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTC 3781 Query 41764 ----GGGACCAT---ATTTTTGGCAATGTGTTTAGACACAATACCAGCCATAAGGTCCCG 41816 || | || |||||| ||| |||||||| | |||||||| | | || | Sbjct 3782 TTTGGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCT 3841 Query 41817 TTGAGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 41860 ||||||||||| |||| ||||||||||||||| || |||| Sbjct 3842 TTGAGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 >seq2410 Length=3205 Score = 84.2 bits (92), Expect = 2e-11 Identities = 114/152 (75%), Gaps = 8/152 (5%) Strand=Plus/Minus Query 68347 TTGGTGGCCCTGGGTGGAATTGAACCACC-ATCTGGCGATTATGAGTCGCTTGCTTGAAC 68405 |||||||||| | |||| |||||||| | | || ||||||||||||| ||||| ||| Sbjct 1027 TTGGTGGCCCCTGCTGGACTTGAACCAGCGACCTAACGATTATGAGTCGTTTGCTCTAAC 968 Query 68406 CTTC-CAGCTACAGGGCCTTGGT--GCTGATTGACGGAATCGAACCGCCGACCTTCTCAT 68462 | | ||||| |||| | |||| |||| | ||| ||||||| ||||| || | Sbjct 967 CAACTGAGCTA-AGGGGCGTGGTACGCTG--TATAGGATTCGAACCTATGACCTACTGCT 911 Query 68463 TACAAGTGAGTTGCTCTA-CCTACTGAGCTAA 68493 || ||| |||||||||| || |||||||||| Sbjct 910 TAGAAGGCAGTTGCTCTATCCAACTGAGCTAA 879 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 529039393477560