Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4853 127 2e-24 seq2021 116 3e-21 >seq4853 Length=2014 Score = 127 bits (140), Expect = 2e-24 Identities = 777/1237 (63%), Gaps = 36/1237 (3%) Strand=Plus/Minus Query 122906 CGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGA 122965 ||| ||| ||||||| | || ||||| || ||| | ||| | ||||| || ||||| Sbjct 1352 CGAGCGTCCTCAACATCTACTGATGCGTGTGGCTGTGGGCATACACGGCGAGGATATCGA 1293 Query 122966 AAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCAC 123025 || | ||||| ||| |||| | || | | ||| || ||||| |||||| Sbjct 1292 TGCGGCCATAGAAACCTACAATTTACTATCAGAGCGCTATTTTACTCACGCCTCTCCCAC 1233 Query 123026 TTTGTTCGCCGCCGGCACGAAGTTGCCT-CAGTTGTCTTCGTGTTTTTTGCTCACCTTGC 123084 | ||||| || | ||| ||| ||| || |||| || ||||| ||||||| || Sbjct 1232 GCTATTCGCTGCAGCCAC-AAGACGCCCACAACTGTCCTCCTGTTTCCTGCTCACTATGG 1174 Query 123085 GCGAAGACAGCATCACCGGTATCTATGAAA--CTTTGCGCGATTGCGCGTTGATTTCCAA 123142 | ||| |||| ||||| | | || | | | || || |||| |||| ||||| Sbjct 1173 TTGCTGACTCCATCGAGGGTATTT-TCAAGTCCGTAGAGCAAT-GCGCCATGATCTCCAA 1116 Query 123143 ATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAG 123202 | | |||||||| ||| |||| ||||| | || | | | || | |||| Sbjct 1115 GTCCGCAGGCGGCATTGGCCTGAATGTGCATTGCATACGCGCCAAAGGCACGGGCATTGC 1056 Query 123203 AAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGT 123262 |||| | || | | | || | | | |||||||| || | |||||||| | Sbjct 1055 TGGCACGAATGGCACCTCTAATGGTTTAGTGCCTATGCTGCGTGTGTTCAATAACGTGGC 996 Query 123263 GCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACC 123319 ||| |||| || ||||| ||||||||| ||| || | || |||||| | ||||| Sbjct 995 GCGCTACGTGGATCAGGGAGGCGGCAAACGTCCAGGTGCCTTCGCCATCTATTTGGAACC 936 Query 123320 GTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC--GGAAGAA 123377 |||||| ||| | | || ||||| |||| || | || || ||| |||||| Sbjct 935 CTGGCACTCGGATATATTTGAGTTTTTGGATTTGAA--GAAAAATACTGGCAAGGAAGAG 878 Query 123378 AAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTA 123437 | || || ||||| || || ||| | ||| ||||||| ||||| ||| ||| || Sbjct 877 TATCGTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTG 818 Query 123438 AAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTT 123497 | | || |||| ||||| |||||||| || | ||| ||||| | || ||| Sbjct 817 GAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTT 758 Query 123498 TACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG------CAAACAG 123551 | || | | || || | | || | | |||| ||||| ||||| ||| | Sbjct 757 TGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGC 698 Query 123552 GTTAGTCAGGTTC-CGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610 | | | | || | ||| |||| ||||| || | ||||| ||||| Sbjct 697 ACTGTTAAAGCTCAAACCTTGTGGTTTG-------CCATTATAGAGGCTCAAGTGGAAAC 645 Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670 || || || || |||||||| || || || || || | || | ||||| || | Sbjct 644 TGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCT 585 Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730 || || || || || || ||| | ||| | |||||| | ||||| | | ||| | Sbjct 584 AGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGA 525 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGA---AAACGGCGC 123787 | | || || |||||||| || || ||| | ||| | ||| | | || | Sbjct 524 AATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGACAAGAC 465 Query 123788 TTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAAT 123847 || | |||| ||| |||||| | | |||| |||| | |||||||||||||| Sbjct 464 TTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAAT 405 Query 123848 TATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAAACACAG 123904 || || | |||| || || || ||| || |||| || ||| || || | Sbjct 404 CATAGACATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCG 348 Query 123905 ACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTA 123964 || | || | || | ||||| || || || || || || | |||| || || Sbjct 347 TCCCATAGGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATA 288 Query 123965 CGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGC 124024 ||||| || |||||| ||| ||| |||||| ||||| |||||||| || || Sbjct 287 TGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAATATTTGAAACGATTTATTATGGTGC 228 Query 124025 TTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAG 124084 ||||| || ||||| || | || | | | || | || |||| ||| |||||| Sbjct 227 CTTGGAAGCCAGCTGTGAGTTGGCTGAGAAGCTGGGTCCCTATGAAACTTATGCGGGCTC 168 Query 124085 CCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121 || | ||| || ||||| ||||| || |||||| Sbjct 167 ACCTGTCAGCAAGGGAATTTTACAGTATGATATGTGG 131 >seq2021 Length=2943 Score = 116 bits (128), Expect = 3e-21 Identities = 523/824 (63%), Gaps = 30/824 (4%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAA 123293 |||||||| || | |||||||| | ||| |||| || ||||| ||||||||| | Sbjct 691 ATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGTCCA 750 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353 ||||| | || |||||| ||||||| |||||| ||| | | || ||||| |||| Sbjct 751 GGCGCCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTG 810 Query 123354 AAACGCAACATGGGGGC--GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411 || | || || ||| |||||| | || || ||||| || || ||| ||||| Sbjct 811 AA--GAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTTTATGCTCTATGGA 868 Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471 ||||||| || || ||| ||| || | | || |||| ||||| |||||||| || Sbjct 869 TACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCAC 928 Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531 | ||| ||||| | || |||| || | | || || | | || | | ||| Sbjct 929 ACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAAT 988 Query 123532 ACGAGCGCGAAGG------CAAACAGGTTAGTCAGGTTC-CGGCACGTGATTTGTTCAAA 123584 | ||||| ||||| ||| | | | | | || | ||| |||| Sbjct 989 ATGAGCGTGAAGGTCGTGCCAATCGCACTGTTAAAGCTCAAACCTTGTGGTTTG------ 1042 Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644 ||||| || | || || ||||| || || || || |||||||| || || || || Sbjct 1043 -CCATTATAGAGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGT 1101 Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704 || | || | ||||| || | || || || || || || ||| | ||| | ||| Sbjct 1102 AATCGCAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAA 1161 Query 123705 ATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG 123764 ||| | ||||| | | ||| || | || || |||||||| || || ||| | Sbjct 1162 ATTGTAGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTC 1221 Query 123765 AATCGTTGCGTCGA---AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821 ||| | ||| | | || ||| | |||| ||| |||||| | | ||| Sbjct 1222 AATATGTTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAA 1281 Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC- 123880 | |||| | |||||||||||||| || || | |||| || || || ||| || Sbjct 1282 ATTGTAACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGCC 1341 Query 123881 --GCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938 |||| || ||| || || | || | || | ||| | ||||| || || || Sbjct 1342 AAGCGT---TCAAATATGCGTCATCGTCCCATAGGTATTGGCGTACAAGGATTCGCAGAT 1398 Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998 || || || | |||| || || ||||| || |||||| ||| ||| ||| Sbjct 1399 GCATTAATACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAA 1458 Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGA 124042 ||| ||||| |||||||| || || ||||| || ||||| || Sbjct 1459 ATATTTGAAACGATTTATTATGGTGCCTTGGAAGCCAGCTGTGA 1502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451827771908040