Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4853 127 2e-24
seq2021 116 3e-21
>seq4853
Length=2014
Score = 127 bits (140), Expect = 2e-24
Identities = 777/1237 (63%), Gaps = 36/1237 (3%)
Strand=Plus/Minus
Query 122906 CGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCGACATCGA 122965
||| ||| ||||||| | || ||||| || ||| | ||| | ||||| || |||||
Sbjct 1352 CGAGCGTCCTCAACATCTACTGATGCGTGTGGCTGTGGGCATACACGGCGAGGATATCGA 1293
Query 122966 AAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGAGTCCCAC 123025
|| | ||||| ||| |||| | || | | ||| || ||||| ||||||
Sbjct 1292 TGCGGCCATAGAAACCTACAATTTACTATCAGAGCGCTATTTTACTCACGCCTCTCCCAC 1233
Query 123026 TTTGTTCGCCGCCGGCACGAAGTTGCCT-CAGTTGTCTTCGTGTTTTTTGCTCACCTTGC 123084
| ||||| || | ||| ||| ||| || |||| || ||||| ||||||| ||
Sbjct 1232 GCTATTCGCTGCAGCCAC-AAGACGCCCACAACTGTCCTCCTGTTTCCTGCTCACTATGG 1174
Query 123085 GCGAAGACAGCATCACCGGTATCTATGAAA--CTTTGCGCGATTGCGCGTTGATTTCCAA 123142
| ||| |||| ||||| | | || | | | || || |||| |||| |||||
Sbjct 1173 TTGCTGACTCCATCGAGGGTATTT-TCAAGTCCGTAGAGCAAT-GCGCCATGATCTCCAA 1116
Query 123143 ATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCATCAG 123202
| | |||||||| ||| |||| ||||| | || | | | || | ||||
Sbjct 1115 GTCCGCAGGCGGCATTGGCCTGAATGTGCATTGCATACGCGCCAAAGGCACGGGCATTGC 1056
Query 123203 AAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACGCCGT 123262
|||| | || | | | || | | | |||||||| || | |||||||| |
Sbjct 1055 TGGCACGAATGGCACCTCTAATGGTTTAGTGCCTATGCTGCGTGTGTTCAATAACGTGGC 996
Query 123263 GCGGCACGTCGACCAGGG---CGGCAAACGCAAAGGCGCGATGGCGATCTATCTAGAACC 123319
||| |||| || ||||| ||||||||| ||| || | || |||||| | |||||
Sbjct 995 GCGCTACGTGGATCAGGGAGGCGGCAAACGTCCAGGTGCCTTCGCCATCTATTTGGAACC 936
Query 123320 GTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGC--GGAAGAA 123377
|||||| ||| | | || ||||| |||| || | || || ||| ||||||
Sbjct 935 CTGGCACTCGGATATATTTGAGTTTTTGGATTTGAA--GAAAAATACTGGCAAGGAAGAG 878
Query 123378 AAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCGTA 123437
| || || ||||| || || ||| | ||| ||||||| ||||| ||| ||| ||
Sbjct 877 TATCGTGCACGAGATTTATTCTATGCTCTGTGGATACCCGACTTGTTCATGAAACGTGTG 818
Query 123438 AAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACGTT 123497
| | || |||| ||||| |||||||| || | ||| ||||| | || |||
Sbjct 817 GAGGCAGATGGCGATTGGTCACTCATGTGCCCACACAAGTGCCCCGGACTACATGAAGTT 758
Query 123498 TACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGG------CAAACAG 123551
| || | | || || | | || | | |||| ||||| ||||| ||| |
Sbjct 757 TGGGGTGAAGAATTCGAGCAACTTTATGAGAAATATGAGCGTGAAGGTCGTGCCAATCGC 698
Query 123552 GTTAGTCAGGTTC-CGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAAC 123610
| | | | || | ||| |||| ||||| || | ||||| |||||
Sbjct 697 ACTGTTAAAGCTCAAACCTTGTGGTTTG-------CCATTATAGAGGCTCAAGTGGAAAC 645
Query 123611 CGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTT 123670
|| || || || |||||||| || || || || || | || | ||||| || |
Sbjct 644 TGGCACTCCATATATGCTCTATAAGGATGCTTGTAATCGCAAGAGTAATCAACAGAATCT 585
Query 123671 GGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAGCGATGCCGATCA 123730
|| || || || || || ||| | ||| | |||||| | ||||| | | ||| |
Sbjct 584 AGGCACTATCAAGTGCAGCAATTTATGCACTGAAATTGTAGAATATTCGGCACCGGATGA 525
Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGTCGA---AAACGGCGC 123787
| | || || |||||||| || || ||| | ||| | ||| | | || |
Sbjct 524 AATTGCTGTTTGTAATTTAGCCTCAATTGCACTCAATATGTTTGTCAACCCAGACAAGAC 465
Query 123788 TTTTAATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAGAATTTGAACAAAAT 123847
|| | |||| ||| |||||| | | |||| |||| | ||||||||||||||
Sbjct 464 TTATGATTTTAAAAAACTCAAAGAAGTTGCTAAAATTGTAACACGTAATTTGAACAAAAT 405
Query 123848 TATCGATGTTAATTTTTATCCTTTGGAGGAAGC---GCGTTTGTCTAATTTGAAACACAG 123904
|| || | |||| || || || ||| || |||| || ||| || || |
Sbjct 404 CATAGACATCAATTACTACCCGCTGCCGGAGGCCAAGCGT---TCAAATATGCGTCATCG 348
Query 123905 ACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATGCCGTA 123964
|| | || | || | ||||| || || || || || || | |||| || ||
Sbjct 347 TCCCATAGGTATTGGAGTACAAGGATTCGCAGATGCATTGATACTCATGCGTTATCCATA 288
Query 123965 CGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGC 124024
||||| || |||||| ||| ||| |||||| ||||| |||||||| || ||
Sbjct 287 TGAAAGTGAGGAAGCATTTAAGCTAAATCAACAAATATTTGAAACGATTTATTATGGTGC 228
Query 124025 TTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAG 124084
||||| || ||||| || | || | | | || | || |||| ||| ||||||
Sbjct 227 CTTGGAAGCCAGCTGTGAGTTGGCTGAGAAGCTGGGTCCCTATGAAACTTATGCGGGCTC 168
Query 124085 CCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGG 124121
|| | ||| || ||||| ||||| || ||||||
Sbjct 167 ACCTGTCAGCAAGGGAATTTTACAGTATGATATGTGG 131
>seq2021
Length=2943
Score = 116 bits (128), Expect = 3e-21
Identities = 523/824 (63%), Gaps = 30/824 (4%)
Strand=Plus/Plus
Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCAAA 123293
|||||||| || | |||||||| | ||| |||| || ||||| ||||||||| |
Sbjct 691 ATGCTGCGTGTGTTCAATAACGTGGCGCGCTACGTGGATCAGGGAGGCGGCAAACGTCCA 750
Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTA 123353
||||| | || |||||| ||||||| |||||| ||| | | || ||||| ||||
Sbjct 751 GGCGCCTTCGCCATCTATTTAGAACCCTGGCACTCGGATATATTTGAGTTTTTGGATTTG 810
Query 123354 AAACGCAACATGGGGGC--GGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGG 123411
|| | || || ||| |||||| | || || ||||| || || ||| |||||
Sbjct 811 AA--GAAAAATACTGGCAAGGAAGAGTATCGTGCACGAGATTTATTTTATGCTCTATGGA 868
Query 123412 TACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCG 123471
||||||| || || ||| ||| || | | || |||| ||||| |||||||| ||
Sbjct 869 TACCCGACTTATTCATGAAACGTGTGGAGGCAGATGGCGATTGGTCACTCATGTGCCCAC 928
Query 123472 ATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAAT 123531
| ||| ||||| | || |||| || | | || || | | || | | |||
Sbjct 929 ACAAGTGCCCCGGACTACATGAAGTTTGGGGTGAAGAATTCGAGCAACTTTATGAGAAAT 988
Query 123532 ACGAGCGCGAAGG------CAAACAGGTTAGTCAGGTTC-CGGCACGTGATTTGTTCAAA 123584
| ||||| ||||| ||| | | | | | || | ||| ||||
Sbjct 989 ATGAGCGTGAAGGTCGTGCCAATCGCACTGTTAAAGCTCAAACCTTGTGGTTTG------ 1042
Query 123585 TTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGC 123644
||||| || | || || ||||| || || || || |||||||| || || || ||
Sbjct 1043 -CCATTATAGAGGCTCAGGTGGAAACTGGCACTCCATATATGCTCTATAAGGATGCTTGT 1101
Query 123645 AACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAA 123704
|| | || | ||||| || | || || || || || || ||| | ||| | |||
Sbjct 1102 AATCGCAAGAGTAATCAACAGAATCTAGGCACTATCAAGTGCAGCAATTTATGCACTGAA 1161
Query 123705 ATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTG 123764
||| | ||||| | | ||| || | || || |||||||| || || ||| |
Sbjct 1162 ATTGTAGAATATTCGGCACCGGATGAAATTGCTGTTTGTAATTTAGCCTCAATTGCACTC 1221
Query 123765 AATCGTTGCGTCGA---AAACGGCGCTTTTAATTTCCAAACGCTCAAACGCATAACAAAA 123821
||| | ||| | | || ||| | |||| ||| |||||| | | |||
Sbjct 1222 AATATGTTTGTCAACCCAGACAAGACTTATGATTTTAAAAAACTCAAAGAAGTTGCTAAA 1281
Query 123822 ACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGC- 123880
| |||| | |||||||||||||| || || | |||| || || || ||| ||
Sbjct 1282 ATTGTAACACGTAATTTGAACAAAATCATAGACATCAATTACTACCCGCTGCCGGAGGCC 1341
Query 123881 --GCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGAC 123938
|||| || ||| || || | || | || | ||| | ||||| || || ||
Sbjct 1342 AAGCGT---TCAAATATGCGTCATCGTCCCATAGGTATTGGCGTACAAGGATTCGCAGAT 1398
Query 123939 GCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAA 123998
|| || || | |||| || || ||||| || |||||| ||| ||| |||
Sbjct 1399 GCATTAATACTCATGCGTTATCCATATGAAAGTGAGGAAGCATTTAAGCTAAATCAACAA 1458
Query 123999 ATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGA 124042
||| ||||| |||||||| || || ||||| || ||||| ||
Sbjct 1459 ATATTTGAAACGATTTATTATGGTGCCTTGGAAGCCAGCTGTGA 1502
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451827771908040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |