Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_012740.1 Length=166418 Score E Sequences producing significant alignments: (Bits) Value seq2789 84.2 2e-11 >seq2789 Length=15484 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/255 (68%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 37913 TTAACATACGGCGCTAACACCTGGTCGATGTTTGCAATTGTGGTCCCGCCATATTGATGA 37972 || ||||| || ||||| | ||||| || ||| || || || ||||| |||| Sbjct 3516 TTTACATAAGGGGCTAAAATAATATCGATATTGTTAATCGTTGTTCCACCATAAGTATGA 3575 Query 37973 CTTGCCACCTGTGCGATAATTTGAGCGGTTACAGCACATGCAACACCGATCGATTTAGGA 38032 ||||| || || || || |||||||| |||| ||| ||| || || || ||| Sbjct 3576 CTTGCGACTTGCGCTATTATTTGAGCAGTTATAGCCGTTGCTGTTCCAATTGAACGTGGA 3635 Query 38033 CTTTCGATTTGTGCGCTACCCAATTTAAAACCATTCTCTAACATGTCTTTGAGATTAACA 38092 |||| |||| || | || | |||||| ||| || | ||| |||| | || ||| Sbjct 3636 GTTTCAATTTCAGCATTTCCTATTTTAAAGCCACCTTCAAGCATTCCTTTTAAATCAACT 3695 Query 38093 AGACAG-CAGTTAGTAAACGGCATAGCTGGTGCATAATCCATATCATGATAATGAATATC 38151 | ||| || ||| | || | | ||||| |||||| | ||||||||||||||| || Sbjct 3696 A-ACATACAATTAAACATTGGAAAAAATGGTGAATAATCTAAATCATGATAATGAATTTC 3754 Query 38152 ACCGTCTACATGCGC 38166 ||| | | |||| || Sbjct 3755 ACCTTTTTCATGAGC 3769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532202965179120