Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq1845 132 6e-26 seq24243 131 2e-25 seq4853 122 1e-22 seq2021 109 7e-19 >seq1845 Length=2059 Score = 132 bits (146), Expect = 6e-26 Identities = 253/368 (69%), Gaps = 6/368 (2%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||| || || || | || || || || ||||| || | |||| ||||| Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||| | ||||||| | || | |||| ||| |||||| | Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 175923 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1731 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1674 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 |||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| || Sbjct 1673 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1614 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042 ||| || ||||| | | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1613 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1555 Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102 |||||||||| ||||| ||||| || ||||| | | | ||| || |||||||||| | Sbjct 1554 CACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTT 1495 Query 176103 CATCCTTG 176110 ||| |||| Sbjct 1494 CATGCTTG 1487 >seq24243 Length=2007 Score = 131 bits (144), Expect = 2e-25 Identities = 300/447 (67%), Gaps = 6/447 (1%) Strand=Plus/Minus Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805 |||| ||||| || || || | || || || || ||||| || | |||| ||||| Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495 Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865 | | |||||||| | ||||||| | || | |||| ||| |||||| | Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435 Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 175923 | | | |||| | || || | ||| || ||||||||| || || | || | Sbjct 1434 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1377 Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983 |||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| || Sbjct 1376 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1317 Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042 ||| || ||||| | | ||| | ||||| || ||||| || || | ||| | |||| Sbjct 1316 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1258 Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102 |||||||||| ||||| ||||| || ||||| | | | ||| || ||||| |||| | Sbjct 1257 CACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTT 1198 Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162 ||| |||| || | |||||| | | | ||||| | ||| ||| || | || Sbjct 1197 CATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGC 1138 Query 176163 CGTCGGCCATGTGTGCGATGGAACGCT 176189 |||| ||||| | ||||| |||| Sbjct 1137 CGTCCACCATGGAGGGTATGGAGCGCT 1111 >seq4853 Length=2014 Score = 122 bits (134), Expect = 1e-22 Identities = 310/468 (66%), Gaps = 4/468 (1%) Strand=Plus/Plus Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 |||||| || || || || ||||| || | |||||| |||| | |||||| | Sbjct 477 TTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCC 536 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | || |||| |||||| || || ||||| | ||| || ||||| | |||| |||| Sbjct 537 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 596 Query 116533 TTTGACT-TTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 || ||| ||| | ||||| |||||||| |||||||||||||| || || || ||| || Sbjct 597 TT--ACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTT 654 Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650 | | || | ||| || ||| | ||| |||||| ||||| || || | Sbjct 655 GAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTT 714 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTG 116710 | ||| || || || || ||| || ||||||||| | | || || || | Sbjct 715 CACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGG 774 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | ||| | ||| || | ||| ||||| | ||| | |||| || || |||||||| | Sbjct 775 GGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACA 834 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 ||| || ||||| || || |||| | ||| || ||| ||||| | || || Sbjct 835 AGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTAT 894 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878 | ||| |||||||| || | ||||||| |||||| ||||||| Sbjct 895 TTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCA 942 >seq2021 Length=2943 Score = 109 bits (120), Expect = 7e-19 Identities = 306/466 (66%), Gaps = 4/466 (1%) Strand=Plus/Minus Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472 |||||| || || || || ||||| || | |||||| |||| | |||||| | Sbjct 1235 TTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCC 1176 Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532 | || |||| |||||| || || ||||| | ||| || ||||| | |||| |||| Sbjct 1175 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 1116 Query 116533 TTTGACT-TTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590 || ||| ||| | ||||| |||||||| |||||||||||||| || || || ||| | Sbjct 1115 TT--ACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCT 1058 Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650 | | || | ||| || ||| | ||| |||||| ||||| || || | Sbjct 1057 GAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTT 998 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTG 116710 | ||| || || || || ||| || ||||||||| | | || || || | Sbjct 997 CACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGG 938 Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770 | ||| | ||| || | ||| ||||| | ||| | |||| || || |||||||| | Sbjct 937 GGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATA 878 Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830 ||| || ||||| || || | || | ||| || ||| ||||| | || || Sbjct 877 AGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTAT 818 Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876 | ||| |||||||| || | ||||||| |||||| ||||| Sbjct 817 TTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTC 772 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613269090186840