Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq1845 132 6e-26
seq24243 131 2e-25
seq4853 122 1e-22
seq2021 109 7e-19
>seq1845
Length=2059
Score = 132 bits (146), Expect = 6e-26
Identities = 253/368 (69%), Gaps = 6/368 (2%)
Strand=Plus/Minus
Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805
|||| ||||| || || || | || || || || ||||| || | |||| |||||
Sbjct 1851 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1792
Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
| | |||||||| | ||||||| | || | |||| ||| |||||| |
Sbjct 1791 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1732
Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 175923
| | | |||| | || || | ||| || ||||||||| || || | || |
Sbjct 1731 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1674
Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983
|||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| ||
Sbjct 1673 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1614
Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042
||| || ||||| | | ||| | ||||| || ||||| || || | ||| | ||||
Sbjct 1613 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1555
Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102
|||||||||| ||||| ||||| || ||||| | | | ||| || |||||||||| |
Sbjct 1554 CACCGTGATGATAGGCAGACTTTTCAGCCACCGAACCAGACAATTGTGCCACCTTCACTT 1495
Query 176103 CATCCTTG 176110
||| ||||
Sbjct 1494 CATGCTTG 1487
>seq24243
Length=2007
Score = 131 bits (144), Expect = 2e-25
Identities = 300/447 (67%), Gaps = 6/447 (1%)
Strand=Plus/Minus
Query 175746 AACCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGA 175805
|||| ||||| || || || | || || || || ||||| || | |||| |||||
Sbjct 1554 AACCAGTGCCTATGCCGTCTGCACCATTGACCAGTACCATGGGTATAATTGGTATATACC 1495
Query 175806 AGTCTGGTTCAATCGCACGCCCATCATCGTCCAAATAGTTGAGCACGGGGTCATCCCTCG 175865
| | |||||||| | ||||||| | || | |||| ||| |||||| |
Sbjct 1494 ATTTTGGTTCAACTTTCTGTGCATCATCAACTTCGTATTCCAGCAAGGGATCATCCTGTG 1435
Query 175866 GATCAAAGATTTTACGAGCATCCTTGGTGAG--TTTTGTGAAGATGTACCTCGTTTGAGA 175923
| | | |||| | || || | ||| || ||||||||| || || | || |
Sbjct 1434 GGTGATAGATCATGCGTGC--CAATGGCGACAATTTTGTGAAAATATAACGCGCACTGGC 1377
Query 175924 CGCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGAT 175983
|||||||| ||||| | | ||| || ||||||||||||| |||||| | ||||| ||
Sbjct 1376 TGCATCTTTACCACCAGTTAAACGTGTGCCAAATTGACCACGTGGCTCCAACAGATTAAT 1317
Query 175984 ATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTT 176042
||| || ||||| | | ||| | ||||| || ||||| || || | ||| | ||||
Sbjct 1316 ATTATTGGAGCCTACAAAGTTCTGTGCCAAATTAACAATAGTCATTTGTAAGG-ACACTT 1258
Query 176043 CACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCT 176102
|||||||||| ||||| ||||| || ||||| | | | ||| || ||||| |||| |
Sbjct 1257 CACCGTGATGATAGGCGGACTTTTCAGCCACCGAACCAGACAATTGTGCCACTTTCACTT 1198
Query 176103 CATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGC 176162
||| |||| || | |||||| | | | ||||| | ||| ||| || | ||
Sbjct 1197 CATGCTTGTCATTACGTTTGAAGCAAGTGAATAGCACCTTACGCTGGCCAGGTTTAAAGC 1138
Query 176163 CGTCGGCCATGTGTGCGATGGAACGCT 176189
|||| ||||| | ||||| ||||
Sbjct 1137 CGTCCACCATGGAGGGTATGGAGCGCT 1111
>seq4853
Length=2014
Score = 122 bits (134), Expect = 1e-22
Identities = 310/468 (66%), Gaps = 4/468 (1%)
Strand=Plus/Plus
Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472
|||||| || || || || ||||| || | |||||| |||| | |||||| |
Sbjct 477 TTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCC 536
Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532
| || |||| |||||| || || ||||| | ||| || ||||| | |||| ||||
Sbjct 537 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 596
Query 116533 TTTGACT-TTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590
|| ||| ||| | ||||| |||||||| |||||||||||||| || || || ||| ||
Sbjct 597 TT--ACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACTT 654
Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650
| | || | ||| || ||| | ||| |||||| ||||| || || |
Sbjct 655 GAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTT 714
Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTG 116710
| ||| || || || || ||| || ||||||||| | | || || || |
Sbjct 715 CACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGG 774
Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770
| ||| | ||| || | ||| ||||| | ||| | |||| || || |||||||| |
Sbjct 775 GGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAACA 834
Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830
||| || ||||| || || |||| | ||| || ||| ||||| | || ||
Sbjct 835 AGTCGGGTATCCACAGAGCATAGAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTAT 894
Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCA 116878
| ||| |||||||| || | ||||||| |||||| |||||||
Sbjct 895 TTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTCCA 942
>seq2021
Length=2943
Score = 109 bits (120), Expect = 7e-19
Identities = 306/466 (66%), Gaps = 4/466 (1%)
Strand=Plus/Minus
Query 116413 TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCA 116472
|||||| || || || || ||||| || | |||||| |||| | |||||| |
Sbjct 1235 TTGACAAACATATTGAGTGCAATTGAGGCTAAATTACAAACAGCAATTTCATCCGGTGCC 1176
Query 116473 GTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGA 116532
| || |||| |||||| || || ||||| | ||| || ||||| | |||| ||||
Sbjct 1175 GAATATTCTACAATTTCAGTGCATAAATTGCTGCACTTGATAGTGCCTAGATTCTGTTGA 1116
Query 116533 TTTGACT-TTGTG-TTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTT 116590
|| ||| ||| | ||||| |||||||| |||||||||||||| || || || ||| |
Sbjct 1115 TT--ACTCTTGCGATTACAAGCATCCTTATAGAGCATATATGGAGTGCCAGTTTCCACCT 1058
Query 116591 GGGACTTGAGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650
| | || | ||| || ||| | ||| |||||| ||||| || || |
Sbjct 1057 GAGCCTCTATAATGGCAAACCACAAGGTTTGAGCTTTAACAGTGCGATTGGCACGACCTT 998
Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTG 116710
| ||| || || || || ||| || ||||||||| | | || || || |
Sbjct 997 CACGCTCATATTTCTCATAAAGTTGCTCGAATTCTTCACCCCAAACTTCATGTAGTCCGG 938
Query 116711 GTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGA 116770
| ||| | ||| || | ||| ||||| | ||| | |||| || || |||||||| |
Sbjct 937 GGCACTTGTGTGGGCACATGAGTGACCAATCGCCATCTGCCTCCACACGTTTCATGAATA 878
Query 116771 GGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGAT 116830
||| || ||||| || || | || | ||| || ||| ||||| | || ||
Sbjct 877 AGTCGGGTATCCATAGAGCATAAAATAAATCTCGTGCACGATACTCTTCCTTGCCAGTAT 818
Query 116831 TGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTC 116876
| ||| |||||||| || | ||||||| |||||| |||||
Sbjct 817 TTTTCTTCAAATCCAAAAACTCAAATATATCCGAGTGCCAGGGTTC 772
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613269090186840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |