Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq12187 329 3e-85 >seq12187 Length=3570 Score = 329 bits (364), Expect = 3e-85 Identities = 507/719 (71%), Gaps = 6/719 (1%) Strand=Plus/Minus Query 132715 TCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGT 132774 |||||||| | | || ||||| ||||| || |||| ||||| || |||||| | Sbjct 1731 TCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATG 1672 Query 132775 CCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCG 132834 || | |||| ||| |||||||| || |||||||| ||| || || || || || Sbjct 1671 CCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCA 1612 Query 132835 GTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG 132894 | |||||| | |||| | || || ||||||||||| ||||||||||| Sbjct 1611 CATATGATTTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAA 1552 Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954 || |||||||| ||||||||||| ||||| | ||||| || || ||| ||| |||| | Sbjct 1551 CAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGG 1492 Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014 || |||||||| || ||||| || ||||| || || | |||||||||||| ||||| Sbjct 1491 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAA 1432 Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074 | ||||| || || || || || | | ||||| || || |||| ||| | | Sbjct 1431 ATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG 1372 Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| || ||||| || ||||| ||||| ||| |||| |||||| |||||||| Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTT 1313 Query 133134 CA--ACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191 | | ||| | || | || | | ||| | ||||||||| || | | ||| Sbjct 1312 AAATAGAAAATCACGTTGTTTT--GTGTCACGTATGTAGGTGTCAATCAAAATGCTGTAC 1255 Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251 ||||| ||||| || || |||||||| ||||| || || ||||| || |||||||| Sbjct 1254 ATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTT 1195 Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311 | || |||||||| ||||||||| |||| |||||| ||||| ||||| || |||| Sbjct 1194 ATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCG 1135 Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371 |||||||| |||| || ||| || ||||| | ||| || || |||| |||||| Sbjct 1134 GCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAG 1075 Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 || | | |||||| | | ||||| ||||| || |||||||| || || ||||| || Sbjct 1074 TCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499978676684160