Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq12187 329 3e-85
>seq12187
Length=3570
Score = 329 bits (364), Expect = 3e-85
Identities = 507/719 (71%), Gaps = 6/719 (1%)
Strand=Plus/Minus
Query 132715 TCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGT 132774
|||||||| | | || ||||| ||||| || |||| ||||| || |||||| |
Sbjct 1731 TCGACGAGTAAGCGATCAGCCACAAACTCTATATATTCAGACATAAGTTTGCAATTCATG 1672
Query 132775 CCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCG 132834
|| | |||| ||| |||||||| || |||||||| ||| || || || || ||
Sbjct 1671 CCAATCAGATTCACAGGCAGCGCATCAGTGAGAAACTCTTGTTCTATTTTTACAGCCTCA 1612
Query 132835 GTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAG 132894
| |||||| | |||| | || || ||||||||||| |||||||||||
Sbjct 1611 CATATGATTTCAAGTATGCGCTCACGACTAGGTTTCTGCACCAAATGTTTGAACATCAAA 1552
Query 132895 CAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAG 132954
|| |||||||| ||||||||||| ||||| | ||||| || || ||| ||| |||| |
Sbjct 1551 CAGGCAAAGTCACAATGCAAGCCTTCGTCACGTGAAATCAGCTCATTGGAGAATGTCAGG 1492
Query 132955 CCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAG 133014
|| |||||||| || ||||| || ||||| || || | |||||||||||| |||||
Sbjct 1491 CCAGGCATGAGACCACGTTTCTTAAGCCAGAAAATAGAGGCGAAACTGCCACTGAAGAAA 1432
Query 133015 ACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCG 133074
| ||||| || || || || || | | ||||| || || |||| ||| | |
Sbjct 1431 ATACCCTCAACAGCTGCAAATGCTATAATACGCTCACCAAAATTGGCCGATTTCGATGAG 1372
Query 133075 ATCCAGCGCAGCGCCCATTCGGCCTT-TTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133
|||||| || ||||| || ||||| ||||| ||| |||| |||||| ||||||||
Sbjct 1371 ATCCAGGCCATGGCCCAATCAGCCTTCTTCTTAACAGCA-GGCAGCGTTTCAATGGCGTT 1313
Query 133134 CA--ACAAACGGAGTTTCTCTTCCGAGGAACGCACGTAGGTGTCGATGAGGGTCGAATAC 133191
| | ||| | || | || | | ||| | ||||||||| || | | |||
Sbjct 1312 AAATAGAAAATCACGTTGTTTT--GTGTCACGTATGTAGGTGTCAATCAAAATGCTGTAC 1255
Query 133192 ATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACC 133251
||||| ||||| || || |||||||| ||||| || || ||||| || ||||||||
Sbjct 1254 ATTTCAGAGTGCACATTTTCCATGGCAATTTGGAAACCATAAAAACAACGCGCCTCAGTT 1195
Query 133252 ACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCG 133311
| || |||||||| ||||||||| |||| |||||| ||||| ||||| || ||||
Sbjct 1194 ATTTGTACTTCTTGGCTGAAACGCTCTACCAAATTTTCATTGACAATGCCATCAGAGGCG 1135
Query 133312 GCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAG 133371
|||||||| |||| || ||| || ||||| | ||| || || |||| ||||||
Sbjct 1134 GCGAAAAATGCCAAAACATGCGATATAAAATGCCTCTCATTATCTGTCAATTTTTCCCAG 1075
Query 133372 TCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430
|| | | |||||| | | ||||| ||||| || |||||||| || || ||||| ||
Sbjct 1074 TCATTCATATCCTTGCATAAATCCACTTCCTCCACTGTCCAAAATGAAGCTTCGGCCTT 1016
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 499978676684160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |