Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014467.1 Length=176788 Score E Sequences producing significant alignments: (Bits) Value seq2698 111 2e-19 seq1262 87.8 2e-12 >seq2698 Length=11445 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 51292 CCCACTGTTAAAGTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACT 51351 || ||||| | ||| |||||||||||||| ||||| |||||||| | || ||||| Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368 Query 51352 CTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGC 51411 || ||||| || | ||||| ||||||||||| |||||||| || | || || || Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428 Query 51412 TATGCAGTGCGTTTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACC 51471 ||||| || | || || || | || ||||||||||| | || ||||| || |||| Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488 Query 51472 TTTACA 51477 || ||| Sbjct 5489 TTCACA 5494 >seq1262 Length=72559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 94308 TTTATAACGTTCTTTTCCAGTGCCGTTGCATGAACTGCATTTTGGCGATCCGTAGTTATC 94367 |||||| |||||||||||||| || || || ||||| |||||||| || | | | || Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79 Query 94368 ATATCGCCCAGACCCATTACATGCAACACATTTCCGTAATTTACAGCCATA 94418 ||| | ||||| || ||||| ||||||||||| | |||||| | ||||| Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATA 130 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 49776 ATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGT 49835 ||| |||||| |||||| | ||||||||||| |||||||||||| ||| |||||| Sbjct 63899 ATTACGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGT 63840 Query 49836 TCGAATCCAGCAGGGGCCACCAA 49858 || | |||||||||||||||||| Sbjct 63839 TCAAGTCCAGCAGGGGCCACCAA 63817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565374086053920