Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_014467.1
Length=176788
Score E
Sequences producing significant alignments: (Bits) Value
seq2698 111 2e-19
seq1262 87.8 2e-12
>seq2698
Length=11445
Score = 111 bits (122), Expect = 2e-19
Identities = 136/186 (73%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 51292 CCCACTGTTAAAGTGGAAGGTGGACAACACTTAAACGTAAACGTGTTGCGCCGCGAAACT 51351
|| ||||| | ||| |||||||||||||| ||||| |||||||| | || |||||
Sbjct 5309 CCTACTGTAAGAGTTGAAGGTGGACAACATTTAAATGTAAACGTTCTTCGAAAAGAAACA 5368
Query 51352 CTGGAAGATGCTGTGAAGCATCCAGAAAAATACCCACAGTTAACGATCCGTGTGTCCGGC 51411
|| ||||| || | ||||| ||||||||||| |||||||| || | || || ||
Sbjct 5369 CTTCTTGATGCAGTAGAACATCCTGAAAAATACCCGCAGTTAACAATTAGGGTTTCAGGA 5428
Query 51412 TATGCAGTGCGTTTCAATTCACTGACTCCTGAACAACAGCGCGACGTTATCGCCCGAACC 51471
||||| || | || || || | || ||||||||||| | || ||||| || ||||
Sbjct 5429 TATGCTGTTAGATTTAACTCTTTAACACCTGAACAACAACAAGATGTTATTACCAGAACT 5488
Query 51472 TTTACA 51477
|| |||
Sbjct 5489 TTCACA 5494
>seq1262
Length=72559
Score = 87.8 bits (96), Expect = 2e-12
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 94308 TTTATAACGTTCTTTTCCAGTGCCGTTGCATGAACTGCATTTTGGCGATCCGTAGTTATC 94367
|||||| |||||||||||||| || || || ||||| |||||||| || | | | ||
Sbjct 20 TTTATATCGTTCTTTTCCAGTTCCATTACAAGAACTACATTTTGGTGAACGATGACTGTC 79
Query 94368 ATATCGCCCAGACCCATTACATGCAACACATTTCCGTAATTTACAGCCATA 94418
||| | ||||| || ||||| ||||||||||| | |||||| | |||||
Sbjct 80 ATACCTTCCAGAACCGTTACAAGCAACACATTTTCTCAATTTAAATCCATA 130
Score = 87.8 bits (96), Expect = 2e-12
Identities = 69/83 (83%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 49776 ATTCCGGCCCTTTAGCTTAATTGGTTAGAGCGGGTGACTCATAATCGCGCGGTTGCTGGT 49835
||| |||||| |||||| | ||||||||||| |||||||||||| ||| ||||||
Sbjct 63899 ATTACGGCCCCTTAGCTCAGTTGGTTAGAGCACACGACTCATAATCGTTAGGTCGCTGGT 63840
Query 49836 TCGAATCCAGCAGGGGCCACCAA 49858
|| | ||||||||||||||||||
Sbjct 63839 TCAAGTCCAGCAGGGGCCACCAA 63817
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565374086053920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |