Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29]
31,049 sequences; 69,698,627 total letters
Query= NC_014595.1
Length=170605
Score E
Sequences producing significant alignments: (Bits) Value
seq2789 122 9e-23
>seq2789
Length=15484
Score = 122 bits (134), Expect = 9e-23
Identities = 489/761 (64%), Gaps = 17/761 (2%)
Strand=Plus/Plus
Query 39981 ATATCAGGATACATTCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTT 40040
|||||||||||||||| || ||| ||| || | || || || || |||||||| ||
Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191
Query 40041 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 40100
|| ||| ||| ||| ||||||| | | | ||||||||| || || |
Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251
Query 40101 GGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 40160
| ||| | || || | || || || | ||| | | |||| ||| |||||
Sbjct 3252 GCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATT 3311
Query 40161 ATTCGTTCGG-TCCAGTCAGTTCCGGTACCAAATGTAATTGTCACAAAAGGAGTCTGACC 40219
| || ||| | || | | | || ||||| || || ||||| || || || ||
Sbjct 3312 AATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370
Query 40220 ATTTGAGCTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTC 40279
||||| | || | |||||| | ||||||||| | |||| || ||||| | ||
Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430
Query 40280 TTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCCGCGTC 40339
|||||| |||| | |||| || | || | ||| | ||||||| | ||
Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490
Query 40340 CTCAATATGTTTCGCATAGGTACGTTTAACATAAGGAG--AAAGTACTTTATCTACATTC 40397
| ||| || | | | ||| |||||||| | ||| || | ||| | |||
Sbjct 3491 TTTAATTAACTTTATTTCAGAAGCTTTTACATAAGGGGCTAAAATAAT--ATCGATATTG 3548
Query 40398 GCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAATT 40457
|| || ||||| ||||| ||| || || ||||| | ||||| || | ||
Sbjct 3549 TTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATA 3608
Query 40458 GCAGTAGCAACACTGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGTTTAAATCCG 40517
|| || || | ||||| ||||||||||| | ||||| || | |||||| ||
Sbjct 3609 GCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCA 3668
Query 40518 TTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAA 40577
|||||||||||||||||||| ||||| |||||| | ||||| | || |||
Sbjct 3669 CCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAA 3728
Query 40578 TAATCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC--- 40634
||||| | |||||| ||||||| || ||||||| || ||| | | | | |
Sbjct 3729 TAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTT 3784
Query 40635 -GCGACCAT---ATTTTTGGCAATATGTTTAGATACAATACCAGCCATAAGGTCACGTTG 40690
| | || |||||| ||| ||||||||| | |||||||| | | || | |||
Sbjct 3785 GGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTG 3844
Query 40691 AGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 40731
|||||||| |||| ||||||||||||||| || ||||
Sbjct 3845 AGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 545596165092600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |