Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Liriomyza_20trifolii_20[genbank_20GCA_5F001014935.1_202015-05-29] 31,049 sequences; 69,698,627 total letters Query= NC_014595.1 Length=170605 Score E Sequences producing significant alignments: (Bits) Value seq2789 122 9e-23 >seq2789 Length=15484 Score = 122 bits (134), Expect = 9e-23 Identities = 489/761 (64%), Gaps = 17/761 (2%) Strand=Plus/Plus Query 39981 ATATCAGGATACATTCTTTTGCTTGCACACTCTAAAGCAAGCTGCTTAATATCATAGTTT 40040 |||||||||||||||| || ||| ||| || | || || || || |||||||| || Sbjct 3132 ATATCAGGATACATTCGTTGTGTTGAACATTCAAGCGCCAGTTGTTTTATATCATAATTA 3191 Query 40041 GGGTCGTCTTTATAAAGATTAACACCTTCTTCAACGAACATAACAAGTTTAGGGAAAATA 40100 || ||| ||| ||| ||||||| | | | ||||||||| || || | Sbjct 3192 GGATCGCTATTAATTCTATTTGTCCCTTCTTTTATGGCAAAAACAAGTTTTGGAAATACT 3251 Query 40101 GGAGTTATCCCATCACGACCAAGACCTTTAATACGATTTTTCAGAATTGCTTTCTGAATC 40160 | ||| | || || | || || || | ||| | | |||| ||| ||||| Sbjct 3252 GCCGTTTTTTTATTTTTTCCTAACCCATTTATTCTGTTTCTTAATATTGATTTTTGAATT 3311 Query 40161 ATTCGTTCGG-TCCAGTCAGTTCCGGTACCAAATGTAATTGTCACAAAAGGAGTCTGACC 40219 | || ||| | || | | | || ||||| || || ||||| || || || || Sbjct 3312 AATCTTTCCTCTTTTGTAATTCCAAGT-CCAAAACCAAAAGTAACAAATGGGGTTTGTCC 3370 Query 40220 ATTTGAGCTAAAGAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACGTC 40279 ||||| | || | |||||| | ||||||||| | |||| || ||||| | || Sbjct 3371 ATTTGCGGTATGCAAAGTATTAATTTCATATTCTAATCCTTGAAAAGCATCAAAACATTC 3430 Query 40280 TTTTTCTGTTTTAGATTGGGCATAATTCAACGCATCAGTGATTTGCCATTTTTCCGCGTC 40339 |||||| |||| | |||| || | || | ||| | ||||||| | || Sbjct 3431 TTTTTCAATTTTTTCATTAACATATTTATCTGGATTGGGGATATTATATTTTTCTGTTTC 3490 Query 40340 CTCAATATGTTTCGCATAGGTACGTTTAACATAAGGAG--AAAGTACTTTATCTACATTC 40397 | ||| || | | | ||| |||||||| | ||| || | ||| | ||| Sbjct 3491 TTTAATTAACTTTATTTCAGAAGCTTTTACATAAGGGGCTAAAATAAT--ATCGATATTG 3548 Query 40398 GCAAAAGTCGTTCCGCCATATTGATGGGAAGCAACCTGCGCAGTAATTTGTGCCATAATT 40457 || || ||||| ||||| ||| || || ||||| | ||||| || | || Sbjct 3549 TTAATCGTTGTTCCACCATAAGTATGACTTGCGACTTGCGCTATTATTTGAGCAGTTATA 3608 Query 40458 GCAGTAGCAACACTGATTGATTTAGGAGTTTCAATCTGTGCATTACCGAGTTTAAATCCG 40517 || || || | ||||| ||||||||||| | ||||| || | |||||| || Sbjct 3609 GCCGTTGCTGTTCCAATTGAACGTGGAGTTTCAATTTCAGCATTTCCTATTTTAAAGCCA 3668 Query 40518 TTCTCAAGCATTCCTTTTAAATCTACTAAACAGCAATTAGTAAATGGAAGAGCAGGGGAA 40577 |||||||||||||||||||| ||||| |||||| | ||||| | || ||| Sbjct 3669 CCTTCAAGCATTCCTTTTAAATCAACTAACATACAATTAAACATTGGAAAAAATGGTGAA 3728 Query 40578 TAATCAATATCATGGAAATGAATAATTCCGCTTTCATGTGCTTTCATAATAAAAGAC--- 40634 ||||| | |||||| ||||||| || ||||||| || ||| | | | | | Sbjct 3729 TAATCTAAATCATGATAATGAATTTCACCTTTTTCATGAGC-GTCA-ACT--ACGTCTTT 3784 Query 40635 -GCGACCAT---ATTTTTGGCAATATGTTTAGATACAATACCAGCCATAAGGTCACGTTG 40690 | | || |||||| ||| ||||||||| | |||||||| | | || | ||| Sbjct 3785 GGGAAGTATATGATTTTTAGCATAATGTTTAGAAATTATACCAGCTAACAAATCTCTTTG 3844 Query 40691 AGTTGGAAAAACACGAGAATCTTTATTAGCATTCTCGTTTA 40731 |||||||| |||| ||||||||||||||| || |||| Sbjct 3845 AGTTGGAATAACATTGCTATCTTTATTAGCATTTTCATTTA 3885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545596165092600